Reyes, Mauricio

{"headers":{"title":"Title","year":"Year","type":"Type"},"rows":[{"title":"Riedel EO, de la Rosa E, Baran TA, Hernandez Petzsche M, Baazaoui H, Yang K, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/245046\u0022\u003EThe ISLES\u201924 Dataset: A Multimodal Stroke Imaging Dataset with Hyperacute CT, Acute Postinterventional MRI, and 3-month Clinical Outcomes\u003C\/a\u003E. Radiology: Artificial Intelligence. 2026 May;8(3):e250603.","year":2026,"type":"Journal Article (Further Contribution)"},{"title":"Shu Z, Pahud de Mortanges A, Lohmeier J, P\u00f6llinger A, Guebely De La Hoz FF, Griessmair M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/246552\u0022\u003EExplainability in Clinical AI: Mapping XAI Methods for Thoracic Pathologies\u003C\/a\u003E. BORIS Portal; 2026.","year":2026,"type":"Conference Paper"},{"title":"Lohmeier J, Meinhardt J, Radbruch H, Reyes M, Brenner W, Tietze A, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/217603\u0022\u003ESpatial tumour characteristics as an indirect marker of metabolic dysregulation: evaluation for non-invasive IDH-genotyping of glioma using hybrid [18\u00a0F]FET-PET\/MRI\u003C\/a\u003E. European Journal of Nuclear Medicine and Molecular Imaging. 2026 Feb.;53:1939-50.","year":2026,"type":"Journal Article (Original Article)"},{"title":"Poel R, Mose L, Meuller S, M\u00fcller M, Reinhardt P, Reyes M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/224552\u0022\u003EEvaluation of compartmentalized automatic segmentation for definition of the GTV in glioblastoma radiotherapy\u003C\/a\u003E. Radiotherapy \u0026 Oncology. 2026 Jan.;214:111308.","year":2026,"type":"Journal Article (Original Article)"},{"title":"Spada E, Erb-Eigner K, Pahud de Mortanges A, Reyes M, P\u00f6llinger A. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/246921\u0022\u003EMind the gap: challenges and future directions for content-based image retrieval in clinical radiology\u003C\/a\u003E. Frontiers in Radiology. 2026;6:1810708.","year":2026,"type":"Journal Article (Further Contribution)"},{"title":"Mahapatra D, Roy S, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/245868\u0022\u003EDisentangled generative uncertainty-aware multi-modal diffusion segmentation of medical images\u003C\/a\u003E. Medical Image Analysis. 2026;112:104122.","year":2026,"type":"Journal Article (Original Article)"},{"title":"Schanne DH, Cuenot L, Br\u00fcningk S, Reyes M, Elicin O. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/234099\u0022\u003EAssessing the robustness and clinical evaluation of a deep-learning segmentation model for head and neck cancer\u003C\/a\u003E. Frontiers in Oncology. 2026;16:1731007.","year":2026,"type":"Journal Article (Original Article)"},{"title":"Aumente-Maestro C, M\u00fcller M, Remeseiro B, D\u00edez J, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/214888\u0022\u003EAUDIT: An open-source Python library for AI model evaluation with use cases in MRI brain tumor segmentation\u003C\/a\u003E. Computer Methods and Programs in Biomedicine. 2025 Nov.;271:108991.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Kamath A, Willmann J, Andratschke N, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/218912\u0022\u003EThe impact of U-Net architecture choices and skip connections on the robustness of segmentation across texture variations\u003C\/a\u003E. Computers in Biology and Medicine. 2025 Oct.;197(Pt B):111056.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Poel R, Kamath A, Ermis E, Willmann J, R\u00fcfenacht E, Andratschke N, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/228249\u0022\u003EA dual-layer quality assurance approach leveraging dose prediction for efficient review of automated contours of organs at risk in the brain in radiotherapy\u003C\/a\u003E. Physics and imaging in radiation oncology. 2025 Oct.;36:100888.","year":2025,"type":"Journal Article (Original Article)"},{"title":"de la Rosa E, Reyes M, Liew SL, Hutton A, Wiest R, Kaesmacher J, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/214645\u0022\u003EDeepISLES: a clinically validated ischemic stroke segmentation model from the ISLES\u201922 challenge\u003C\/a\u003E. Nature Communications. 2025 Aug. 9;16(1):7357.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Poel R, R\u00fcfenacht E, Scheib S, Hemmatazad H, Krcek R, Tran S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/214515\u0022\u003EA comprehensive multifaceted technical evaluation framework for implementation of auto-segmentation models in radiotherapy\u003C\/a\u003E. communications medicine. 2025 July 31;5(1):319.","year":2025,"type":"Journal Article (Original Article)"},{"title":"R\u00e4z T, Pahud de Mortanges A, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/214803\u0022\u003EExplainable AI in medicine: challenges of integrating XAI into the future clinical routine\u003C\/a\u003E. Frontiers in Radiology. Frontiers Media; 2025 July 22;5.","year":2025,"type":"Journal Article (Review)"},{"title":"Willmann J, Kamath A, Poel R, Riggenbach E, Mose L, Bertholet J, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/212656\u0022\u003EPredicting the impact of target volume contouring variations on the organ at risk dose: results of a qualitative survey\u003C\/a\u003E. Radiotherapy \u0026 Oncology. 2025 June 30;","year":2025,"type":"Journal Article (Original Article)"},{"title":"Krcek R, Poel R, Bachmann N, Hemmatazad H, Reinhardt P, Radojewski P, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/211901\u0022\u003E7-Tesla vs. 3-Tesla MRI in low grade glioma radiotherapy planning: Can we improve delineation consistency\u003C\/a\u003E? Vols. 206, Radiotherapy \u0026 Oncology. Elsevier; 2025. pp. S718-S719.","year":2025,"type":"Conference Paper (Abstract)"},{"title":"Li J, Zhou Z, Yang J, Pepe A, Gsaxner C, Luijten G, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/226011\u0022\u003EMedShapeNet - a large-scale dataset of 3D medical shapes for computer vision\u003C\/a\u003E. Biomedical Engineering. 2025;70(1):71-90.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Mahapatra D, Yepes AJ, Bozorgtabar B, Roy S, Ge Z, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/205407\u0022\u003EMulti-Label Generalized Zero Shot Chest Xray Classification By Combining Image-Text Information With Feature Disentanglement\u003C\/a\u003E. IEEE Transactions on Medical Imaging. 2025 Jan.;44(1):31-43.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Yang J, Garcia Henao JA, Dvornek N, He J, Bower DV, Depotter A, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/189654\u0022\u003EPrior knowledge-guided vision-transformer-based unsupervised domain adaptation for intubation prediction in lung disease at one week\u003C\/a\u003E. Computerized Medical Imaging and Graphics. 2024 Dec.;118:102442.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Shu SZ, Pahud de Mortanges A, Poellinger A, Mahapatra D, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/190729\u0022\u003EINFORMER- Interpretability Founded Monitoring of\u00a0Medical Image Deep Learning Models\u003C\/a\u003E. In: Uncertainty for Safe Utilization of Machine Learning in Medical Imaging. Springer Nature Switzerland; 2024. pp. 215-24. (Lecture Notes in Computer Science; vols. 15167).","year":2024,"type":"Conference Paper (Paper)"},{"title":"Mercado Z, Kamath A, Poel R, Willmann J, Ermis E, Riggenbach E, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/189114\u0022\u003EAutomated Dosimetry-informed Segmentation Ranking for Radiotherapy\u003C\/a\u003E. In: Lecture Notes in Computer Science. Springer Nature Switzerland; 2024. pp. 221-30.","year":2024,"type":"Conference Paper (Paper)"},{"title":"Mahapatra D, Tennakoon R, George Y, Roy S, Bozorgtabar B, Ge Z, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/179217\u0022\u003EALFREDO: Active Learning with FeatuRe disEntangelement and DOmain adaptation for medical image classification\u003C\/a\u003E. Medical image analysis. 2024 Oct.;97(103261):103261.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Pahud de Mortanges AHC, Luo H, Shu Z, Kamath AJ, Suter YR, Shelan M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/179273\u0022\u003EOrchestrating explainable artificial intelligence for multimodal and longitudinal data in medical imaging\u003C\/a\u003E. NPJ digital medicine. Nature Publishing Group; 2024 July 22;7(1).","year":2024,"type":"Journal Article (Review)"},{"title":"Poel R, R\u00fcfenacht E, Fix M, Scheib S, Reyes M, Ermis E. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/178859\u0022\u003EClinical evaluation of a deep learning based auto-segmentation model for intracranial organs at risk\u003C\/a\u003E. Vols. 194, Radiotherapy and oncology. Elsevier; 2024. pp. S821-S822.","year":2024,"type":"Conference Paper"},{"title":"Mahapatra D, Bozorgtabar B, Ge Z, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/173277\u0022\u003EGANDALF: Graph-based transformer and Data Augmentation Active Learning Framework with interpretable features for multi-label chest Xray classification\u003C\/a\u003E. Medical image analysis. 2024 Apr.;93(103075):103075.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Maier-Hein L, Reinke A, Godau P, Tizabi MD, Buettner F, Christodoulou E, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/174380\u0022\u003EMetrics reloaded: recommendations for image analysis validation\u003C\/a\u003E. Nature methods. Nature Publishing Group; 2024 Feb.;21(2):195-212.","year":2024,"type":"Journal Article (Review)"},{"title":"Reinke A, Tizabi MD, Baumgartner M, Eisenmann M, Heckmann-N\u00f6tzel D, Kavur AE, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/174381\u0022\u003EUnderstanding metric-related pitfalls in image analysis validation\u003C\/a\u003E. Nature methods. Nature Publishing Group; 2024 Feb.;21(2):182-94.","year":2024,"type":"Journal Article (Review)"},{"title":"Alwan L, Benz DC, Cuddy SAM, Dobner S, Shiri Lord I, Caobelli F, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/172496\u0022\u003ECurrent and Evolving Multimodality Cardiac Imaging in Managing Transthyretin Amyloid Cardiomyopathy\u003C\/a\u003E. JACC. Cardiovascular imaging. Elsevier; 2024 Feb.;17(2):195-211.","year":2024,"type":"Journal Article (Review)"},{"title":"Lerch L, Huber LS, Kamath A, P\u00f6llinger A, Pahud de Mortanges A, Obmann VC, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202793\u0022\u003EDreamOn: a data augmentation strategy to narrow the robustness gap between expert radiologists and deep learning classifiers\u003C\/a\u003E. Frontiers in Radiology. 2024;4:1420545.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Kamath A, Mercado Z, Poel R, Willmann J, Ermis E, Riggenbach E, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/190797\u0022\u003EComparing the Performance of Radiation Oncologists versus a Deep Learning Dose Predictor to Estimate Dosimetric Impact of Segmentation Variations for Radiotherapy\u003C\/a\u003E. In BORIS Portal; 2024.","year":2024,"type":"Conference Paper (Paper)"},{"title":"You S, Wiest RGR, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/170817\u0022\u003ESaRF: Saliency regularized feature learning improves MRI sequence classification\u003C\/a\u003E. Computer methods and programs in biomedicine. 2024 Jan.;243(107867):107867.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Luo H, Pahud de Mortanges A, Inel O, Bernstein A, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/190733\u0022\u003EDWARF: Disease-weighted network for attention map refinement\u003C\/a\u003E. Cornell University; 2024. (arXiv).","year":2024,"type":"Working Paper"},{"title":"Garcia Henao JA, Depotter AGA, Bower DV, Bajercius H, Todorova PT, Saint-James H, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/168956\u0022\u003EA Multiclass Radiomics Method-Based WHO Severity Scale for Improving COVID-19 Patient Assessment and Disease Characterization From CT Scans\u003C\/a\u003E. Investigative radiology. 2023 Dec. 1;58(12):882-93.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Mahapatra D, Jimeno Yepes AJ, Kuanar S, Roy S, Bozorgtabar B, Reyes M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202418\u0022\u003EClass Specific Feature Disentanglement and Text Embeddings for Multi-label Generalized Zero Shot CXR Classification\u003C\/a\u003E. In Springer; 2023. pp. 276-8. (Lecture Notes in Computer Science; vols. 14221).","year":2023,"type":"Conference Paper (Paper)"},{"title":"Kamath AJ, Willmann J, Andratschke N, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202419\u0022\u003EDo We Really Need that Skip-Connection? Understanding Its Interplay with Task Complexity\u003C\/a\u003E. In Springer; 2023. pp. 302-11. (Lecture Notes in Computer Science; vols. 14223).","year":2023,"type":"Conference Paper (Paper)"},{"title":"Gassner M, Barranco Garcia J, Tanadini-Lang S, Bertoldo F, Fr\u00f6hlich F, Guckenberger M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/169497\u0022\u003ESaliency-Enhanced Content-Based Image Retrieval for Diagnosis Support in Dermatology Consultation: Reader Study\u003C\/a\u003E. JMIR dermatology. 2023 Aug. 24;6(e42129):e42129.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Oca\u00f1a-Tienda B, P\u00e9rez-Beteta J, Villanueva-Garc\u00eda JD, Romero-Rosales JA, Molina-Garc\u00eda D, Suter YR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202417\u0022\u003EA comprehensive dataset of annotated brain metastasis MR images with clinical and radiomic data\u003C\/a\u003E. Scientific data. 2023 Apr. 14;10(1):208.","year":2023,"type":"Journal Article (Original Article)"},{"title":"R\u00fcfenacht E, Kamath AJ, Suter YR, Poel R, Ermis E, Scheib S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/121311\u0022\u003EPyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion\u003C\/a\u003E. Computer methods and programs in biomedicine. 2023 Apr.;231(107374):107374.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Mahapatra D, P\u00f6llinger A, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/88799\u0022\u003EGraph Node Based Interpretability Guided Sample Selection for Active Learning\u003C\/a\u003E. IEEE transactions on medical imaging. 2023 Mar.;42(3):661-73.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Rebsamen MA, McKinley RI, Radojewski P, Pistor M, Friedli CD, Hoepner R, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/88156\u0022\u003EReliable brain morphometry from contrast-enhanced T1w-MRI in patients with multiple sclerosis\u003C\/a\u003E. Human brain mapping. 2023 Feb. 15;44(3):970-9.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Silva W, Gon\u00e7alves T, H\u00e4rm\u00e4 KH, Schr\u00f6der EA, Obmann VC, Barroso MC, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202164\u0022\u003EAuthor Correction: Computer-aided diagnosis through medical image retrieval in radiology\u003C\/a\u003E. Scientific reports. 2023 Jan. 26;13(1):1470.","year":2023,"type":"Journal Article (Further Contribution)"},{"title":"Pati S, Baid U, Edwards B, Sheller M, Wang SH, Reina GA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/120975\u0022\u003EAuthor Correction: Federated learning enables big data for rare cancer boundary detection\u003C\/a\u003E. Nature communications. 2023 Jan. 26;14(1):436.","year":2023,"type":"Journal Article (Further Contribution)"},{"title":"Krcek R, Poel R, Hemmatazad H, Reyes M, Ermis E. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/168687\u0022\u003EVariations in contouring brain target volumes and Organs at Risk on 3 T vs. 7 T MRI: An intra-rater\/inter-rater analysis study\u003C\/a\u003E. Strahlentherapie und Onkologie. Springer; 2023. p. 215.","year":2023,"type":"Conference Paper (Abstract)"},{"title":"Kamath AJ, Poel R, Willmann J, Andratschke N, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202415\u0022\u003EHow Sensitive Are Deep Learning Based Radiotherapy Dose Prediction Models To Variability In Organs At Risk Segmentation\u003C\/a\u003E? In IEEE; 2023. pp. 1-4.","year":2023,"type":"Conference Paper (Paper)"},{"title":"R\u00fcfenacht E, Poel R, Kamath AJ, Ermis E, Scheib S, Fix M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202438\u0022\u003EDose Guidance for Radiotherapy-Oriented Deep Learning Segmentation\u003C\/a\u003E. In: Lecture notes in computer science. Cham: Springer; 2023. pp. 525-34.","year":2023,"type":"Conference Paper (Paper)"},{"title":"You S, Tomar D, Bozorgtabar B, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/171606\u0022\u003ESagtta: saliency guided test time augmentation for medical image segmentation across vendor domain shift\u003C\/a\u003E. In BORIS Portal; 2023. pp. 1-4.","year":2023,"type":"Conference Paper (Paper)"},{"title":"Suter YR, Notter M, Meier R, Loosli T, Schucht P, Wiest RGR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/170193\u0022\u003EEvaluating automated longitudinal tumor measurements for glioblastoma response assessment\u003C\/a\u003E. Frontiers in radiology. 2023;3(1211859):1211859.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Kamath AJ, Poel R, Willmann J, Ermis E, Andratschke N, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/172985\u0022\u003EASTRA: Atomic Surface Transformations for Radiotherapy Quality Assurance\u003C\/a\u003E. IEEE; 2023. pp. 1-4.","year":2023,"type":"Conference Paper (Abstract)"},{"title":"Poel R, Kamath AJ, Willmann J, Andratschke N, Ermis E, Aebersold DM, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/169838\u0022\u003EDeep-Learning-Based Dose Predictor for Glioblastoma\u2013Assessing the Sensitivity and Robustness for Dose Awareness in Contouring\u003C\/a\u003E. Cancers. 2023;15(17).","year":2023,"type":"Journal Article (Original Article)"},{"title":"Abayazeed AH, Abbassy A, M\u00fcller M, Hill M, Qayati M, Mohamed S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/120864\u0022\u003ENS-HGlio: A generalizable and repeatable HGG segmentation and volumetric measurement AI algorithm for the longitudinal MRI assessment to inform RANO in trials and clinics\u003C\/a\u003E. Neuro-oncology advances. 2023;5(1):vdac184.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/171607\u0022\u003EMedShapeNet--A Large-Scale Dataset of 3D Medical Shapes for Computer Vision\u003C\/a\u003E. Cornell University; 2023. (arXiv).","year":2023,"type":"Working Paper"},{"title":"Suter YR, Knecht U, Valenzuela WE, Notter M, Hewer E, Schucht P, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/116216\u0022\u003EThe LUMIERE dataset: Longitudinal Glioblastoma MRI with expert RANO evaluation\u003C\/a\u003E. Scientific data. 2022 Dec. 15;9(1):768.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Hernandez Petzsche MR, de la Rosa E, Hanning U, Wiest RGR, Valenzuela WE, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/116041\u0022\u003EISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset\u003C\/a\u003E. Scientific data. 2022 Dec. 10;9(1):762.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Pati S, Baid U, Edwards B, Sheller M, Wang SH, Reina GA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/115892\u0022\u003EFederated learning enables big data for rare cancer boundary detection\u003C\/a\u003E. Nature communications. 2022 Dec. 5;13(1):7346.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Silva W, Gon\u00e7alves T, H\u00e4rm\u00e4 KH, Schr\u00f6der EA, Obmann VC, Barroso MC, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/115812\u0022\u003EComputer-aided diagnosis through medical image retrieval in radiology\u003C\/a\u003E. Scientific reports. 2022 Dec. 1;12(1):20732.","year":2022,"type":"Journal Article (Original Article)"},{"title":"You S, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/169164\u0022\u003EInfluence of contrast and texture based image modifications on the performance and attention shift of U-Net models for brain tissue segmentation\u003C\/a\u003E. Frontiers in neuroimaging. 2022 Oct. 28;1(1012639):1012639.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Poel R, R\u00fcfenacht E, Ermis E, M\u00fcller M, Fix M, Aebersold DM, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/88292\u0022\u003EImpact of random outliers in auto-segmented targets on radiotherapy treatment plans for glioblastoma\u003C\/a\u003E. Radiation oncology. 2022 Oct. 22;17(1):170.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Mahapatra D, P\u00f6llinger A, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/86499\u0022\u003EInterpretability-Guided Inductive Bias For Deep Learning Based Medical Image\u003C\/a\u003E. Medical image analysis. 2022 Oct.;81:102551.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Liew SL, Lo BP, Donnelly MR, Zavaliangos-Petropulu A, Jeong JN, Barisano G, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/85707\u0022\u003EA large, curated, open-source stroke neuroimaging dataset to improve lesion segmentation algorithms\u003C\/a\u003E. Scientific data. 2022 June 16;9(1):320.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Kang M, Hu X, Huang W, Scott MR, Reyes M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/116853\u0022\u003EDual-stream pyramid registration network\u003C\/a\u003E. Medical image analysis. 2022 May;78:102379.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Rebsamen MA, Radojewski P, McKinley RI, Reyes Aguirre MA, Wiest RGR, Rummel C. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/68304\u0022\u003EA Quantitative Imaging Biomarker Supporting Radiological Assessment of Hippocampal Sclerosis Derived From Deep Learning-Based Segmentation of T1w-MRI\u003C\/a\u003E. Frontiers in neurology. 2022 Feb.;13:812432.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Rizzo R, Dziadosz M, Kyathanahally SP, Reyes Aguirre MA, Kreis R. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/202147\u0022\u003EReliability of Quantification Estimates in MR Spectroscopy: CNNs vs Traditional Model Fitting\u003C\/a\u003E. Lecture notes in computer science. 2022;13438:715-24.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Mahapatra D, P\u00f6llinger A, Shao L, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/41190\u0022\u003EInterpretability-Driven Sample Selection Using Self Supervised Learning For Disease Classification And Segmentation\u003C\/a\u003E. IEEE transactions on medical imaging. 2021 Oct.;40(10):2548-62.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Poel R, R\u00fcfenacht E, Herrmann E, Scheib S, Manser P, Aebersold DM, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/57124\u0022\u003EThe predictive value of segmentation metrics on dosimetry in organs at risk of the brain\u003C\/a\u003E. Medical image analysis. 2021 Oct.;73:102161.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Hakim A, Christensen S, Winzeck S, Lansberg MG, Parsons MW, Lucas C, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/42562\u0022\u003EPredicting Infarct Core From Computed Tomography Perfusion in Acute Ischemia With Machine Learning: Lessons From the ISLES Challenge\u003C\/a\u003E. Stroke. 2021 July;52(7):2328-37.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Pinto A, Pereira S, Meier R, Wiest RGR, Alves V, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/39788\u0022\u003ECombining unsupervised and supervised learning for predicting the final stroke lesion\u003C\/a\u003E. Medical image analysis. 2021 Apr.;69(101888):101888.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Menze B, Isensee F, Wiest RGR, Wiestler B, Maier-Hein K, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45328\u0022\u003EAnalyzing Magnetic Resonance Imaging Data from Glioma Patients using Deep Learning\u003C\/a\u003E. Computerized medical imaging and graphics. Elsevier; 2021 Mar.;88:101828.","year":2021,"type":"Journal Article (Review)"},{"title":"McKinley RI, Wepfer R, Aschwanden F, Grunder LN, Muri R, Rummel C, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/39789\u0022\u003ESimultaneous lesion and brain segmentation in multiple sclerosis using deep neural networks\u003C\/a\u003E. Scientific reports. 2021 Jan. 13;11(1):1087.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Suter YR, Knecht U, Wiest RGR, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/85517\u0022\u003EOverall Survival Prediction for Glioblastoma on Pre-treatment MRI Using Robust Radiomics and Priors\u003C\/a\u003E. Lecture notes in computer science. 2021;12658:307-1.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Jungo A, Scheidegger O, Reyes Aguirre MA, Balsiger F. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/55503\u0022\u003Epymia: A Python package for data handling and evaluation in deep learning-based medical image analysis\u003C\/a\u003E. Computer methods and programs in biomedicine. 2021 Jan.;198:105796.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Rebsamen MA, Rummel C, Reyes Aguirre MA, Wiest RGR, McKinley RI. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/55262\u0022\u003EDirect cortical thickness estimation using deep learning-based anatomy segmentation and cortex parcellation\u003C\/a\u003E. Human brain mapping. 2020 Dec.;41(17):4804-1.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Balsiger F, Jungo A, Scheidegger O, Marty B, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/55502\u0022\u003ELearning Bloch Simulations for MR Fingerprinting by Invertible Neural Networks\u003C\/a\u003E. In: Deeba F, Johnson P, W\u00fcrfl T, Ye JC, editors. Machine Learning for Medical Image Reconstruction. Cham: Springer; 2020. pp. 60-9. (Lecture Notes in Computer Science; vols. 12450).","year":2020,"type":"Book Section"},{"title":"Suter YR, Knecht U, Alao M, Valenzuela WE, Hewer EW, Schucht P, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/55210\u0022\u003ERadiomics for glioblastoma survival analysis in pre-operative MRI: exploring feature robustness, class boundaries, and machine learning techniques\u003C\/a\u003E. Cancer imaging : the official publication of the International Cancer Imaging Society. 2020 Aug. 5;20(55):1-13.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Balsiger F, Jungo A, Scheidegger O, Carlier PG, Reyes Aguirre MA, Marty B. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/55488\u0022\u003ESpatially regularized parametric map reconstruction for fast magnetic resonance fingerprinting\u003C\/a\u003E. Medical image analysis. 2020 Aug.;64(101741):101741.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Reyes Aguirre MA, Meier R, Pereira S, Silva CA, Dahlweid FM, von Tengg-Kobligk H, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/36165\u0022\u003EOn the Interpretability of Artificial Intelligence in Radiology: Challenges and Opportunities\u003C\/a\u003E. Radiology: artificial intelligence. Radiological Society of North America; 2020 May 27;2(3):e190043.","year":2020,"type":"Journal Article (Review)"},{"title":"Ermis E, Jungo A, Poel R, Blatti MJ, Meier R, Knecht U, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/54862\u0022\u003EFully automated brain resection cavity delineation for radiation target volume definition in glioblastoma patients using deep learning\u003C\/a\u003E. Radiation oncology. 2020 May 6;15(1):100.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Rebsamen MA, Suter YR, Wiest RGR, Reyes Aguirre MA, Rummel C. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/54842\u0022\u003EBrain Morphometry Estimation: From Hours to Seconds Using Deep Learning\u003C\/a\u003E. Frontiers in neurology. 2020 Apr. 8;11(244):244.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Jungo A, Balsiger F, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/55510\u0022\u003EAnalyzing the Quality and Challenges of Uncertainty Estimations for Brain Tumor Segmentation\u003C\/a\u003E. Frontiers in neuroscience. 2020 Apr. 8;14(282):282.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Hu X, Luo W, Hu J, Guo S, Huang W, Scott MR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/44837\u0022\u003EBrain SegNet: 3D local refinement network for brain lesion segmentation\u003C\/a\u003E. BMC medical imaging. 2020 Feb. 11;20(1):17.","year":2020,"type":"Journal Article (Original Article)"},{"title":"McKinley RI, Wepfer R, Aschwanden F, Grunder LN, Muri R, Rummel C, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/55048\u0022\u003ERobustness of Simultaneous Lesion and Neuroanatomy Segmentation in Multiple Sclerosis Using Deep Neural Networks\u003C\/a\u003E. SSRN Electronic Journal. 2020;","year":2020,"type":"Journal Article (Original Article)"},{"title":"Silva W, P\u00f6llinger A, Cardoso JS, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45330\u0022\u003EInterpretability-Guided Content-Based Medical Image Retrieval\u003C\/a\u003E. In: Lecture notes in computer science. Cham: Springer; 2020. pp. 305-14.","year":2020,"type":"Conference Paper (Paper)"},{"title":"McKinley RI, Wepfer R, Grunder LN, Aschwanden F, Fischer T, Friedli CD, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/185088\u0022\u003EAutomatic detection of lesion load change in Multiple Sclerosis using convolutional neural networks with segmentation confidence\u003C\/a\u003E. NeuroImage: Clinical. 2020;25:102104.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Jin BZ, De Stefano P, Petroulia VD, Rummel C, Kiefer C, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/37783\u0022\u003EDiagnosis of epilepsy after first seizure. Introducing the SWISS FIRST study\u003C\/a\u003E. Clinical and translational neuroscience. 2020;4(2):2514183X2093944.","year":2020,"type":"Journal Article (Original Article)"},{"title":"R\u00fcfenacht E, Jungo A, Ermis E, Hemmatazad H, Blatti MJ, Aebersold DM, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/183964\u0022\u003EFully automated organs at risk delineation for brain tumor radiation planning in patients with glioblastoma using deep learning\u003C\/a\u003E. Vols. 195, Strahlentherapie und Onkologie. Berlin Heidelberg: Springer; 2019. p. 1149.","year":2019,"type":"Conference Paper (Abstract)"},{"title":"da Silva Mendes Pedrosa de Barros NM, Meier R, Pletscher M, Stettler S, Knecht U, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/193388\u0022\u003EAnalysis of metabolic abnormalities in high-grade glioma using MRSI and convex NMF\u003C\/a\u003E. NMR in biomedicine. 2019 Aug.;32(8):e4109.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Suter YR, Jungo A, Rebsamen M, Knecht U, Herrmann E, Wiest RGR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184581\u0022\u003EDeep Learning Versus Classical Regression for Brain Tumor Patient Survival Prediction\u003C\/a\u003E. In: Lecture notes in computer science. Cham: Springer; 2019. pp. 429-40.","year":2019,"type":"Conference Paper (Paper)"},{"title":"Rebsamen MA, Knecht U, Reyes Aguirre MA, Wiest RGR, Meier R, McKinley R. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/193444\u0022\u003EDivide and Conquer: Stratifying Training Data by Tumor Grade Improves Deep Learning-Based Brain Tumor Segmentation\u003C\/a\u003E. Frontiers in neuroscience. 2019;13:1182.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Balsiger F, Soom Y, Scheidegger O, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/185837\u0022\u003ELearning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation\u003C\/a\u003E. In: Medical Image Computing and Computer Assisted Intervention \u2013 MICCAI 2019. Cham: Springer International Publishing; 2019. pp. 273-81. (Lecture Notes in Computer Science; vols. 11765).","year":2019,"type":"Book Section"},{"title":"Chandran V, Maquer GB, Gerig T, Zysset P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/65259\u0022\u003ESupervised learning for bone shape and cortical thickness estimation from CT images for finite element analysis\u003C\/a\u003E. Medical image analysis. 2019;52:42-55.","year":2019,"type":"Journal Article (Original Article)"},{"title":"R\u00fcfenacht E, Jungo A, Ermis E, Blatti MJ, Hemmatazad H, Aebersold DM, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/183221\u0022\u003EOrgans at Risk Delineation for Brain Tumor Radiation Planning in Patients with Glioblastoma Using Deep Learning\u003C\/a\u003E. Vols. 105, International journal of radiation oncology, biology, physics. Elsevier; 2019. pp. E718-E719.","year":2019,"type":"Conference Paper (Abstract)"},{"title":"McKinley RI, Grunder LN, Wepfer R, Aschwanden F, Fischer T, Friedli CD, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184321\u0022\u003EAutomatic detection of lesion load change in Multiple Sclerosis using convolutional neural networks with segmentation con\ufb01dence\u003C\/a\u003E. Cornell University; 2019. (arXiv).","year":2019,"type":"Working Paper"},{"title":"Meier R, Lux P, Jung S, Fischer UM, Gralla J, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/182126\u0022\u003ENeural network-derived perfusion Maps for the assessment of lesions in patients with acute ischemic stroke\u003C\/a\u003E. Radiology: artificial intelligence. 2019;","year":2019,"type":"Journal Article (Original Article)"},{"title":"Jungo A, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/185839\u0022\u003EAssessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation\u003C\/a\u003E. In: Lecture notes in computer science. Springer; 2019. pp. 48-56.","year":2019,"type":"Conference Paper (Paper)"},{"title":"da Silva Mendes Pedrosa de Barros NM, Meier R, Pletscher M, Stettler S, Knecht U, Herrmann E, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/193202\u0022\u003EOn the relation between MR spectroscopy features and the distance to MRI-visible solid tumor in GBM patients\u003C\/a\u003E. Magnetic resonance in medicine. 2018 Dec.;80(6):2339-55.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Hlushchuk R, Zubler CO, Barr\u00e9 S, Correa Shokiche C, Schaad L, R\u00f6thlisberger R, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/156833\u0022\u003ECutting-edge microangio-CT: new dimensions in vascular imaging and kidney morphometry\u003C\/a\u003E. American journal of physiology - renal physiology. 2018 Mar. 1;314(3):F493-F499.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Kjer HM, Fagertun J, Wimmer W, Gerber N, Vera S, Barazzetti L, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/156893\u0022\u003EPatient-specific estimation of detailed cochlear shape from clinical CT images\u003C\/a\u003E. International Journal of Computer Assisted Radiology and Surgery. 2018 Mar.;13(3):389-96.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Balsiger F, Shridhar Konar A, Chikop S, Chandran V, Scheidegger O, Geethanath S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/60226\u0022\u003EMagnetic Resonance Fingerprinting Reconstruction via Spatiotemporal Convolutional Neural Networks\u003C\/a\u003E. In: Machine Learning for Medical Image Reconstruction. Cham: Springer International Publishing; 2018. pp. 39-46. (Lecture Notes in Computer Science; vols. 11074).","year":2018,"type":"Book Section"},{"title":"Pereira S, Meier R, McKinley R, Wiest RGR, Alves V, Silva CA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/193082\u0022\u003EEnhancing interpretability of automatically extracted machine learning features: application to a RBM-Random Forest system on brain lesion segmentation\u003C\/a\u003E. Medical image analysis. 2018;44:228-44.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Pinto A, McKinley R, Alves V, Wiest RGR, Silva CA, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/193279\u0022\u003EStroke Lesion Outcome Prediction Based on MRI Imaging Combined With Clinical Information\u003C\/a\u003E. Frontiers in neurology. 2018;9(1060):1060.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Pereira S, Meier R, Alves V, Reyes Aguirre MA, Silva CA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/181472\u0022\u003EAutomatic Brain Tumor Grading from MRI Data Using Convolutional Neural Networks and Quality Assessment\u003C\/a\u003E. In Cham: Springer International Publishing; 2018. pp. 106-14. (Lecture Notes in Computer Science; vols. 11038).","year":2018,"type":"Conference Paper (Paper)"},{"title":"Herrmann E, Ermis E, Meier R, Blatti MJ, Knecht U, Aebersold DM, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/62462\u0022\u003EFully Automated Segmentation of the Brain Resection Cavity for Radiation Target Volume Definition in Glioblastoma Patients\u003C\/a\u003E. Vols. 102, International journal of radiation oncology, biology, physics. Elsevier; 2018. p. S194.","year":2018,"type":"Conference Paper (Abstract)"},{"title":"Mahapatra D, Bozorgtabar B, Thiran JP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/181470\u0022\u003EEfficient Active Learning for Image Classification and Segmentation Using a Sample Selection and Conditional Generative Adversarial Network\u003C\/a\u003E. In: Frangi AF, Schnabel JA, Davatzikos C, Alberola-L\u00f3pez C, Fichtinger G, editors. Cham: Springer International Publishing; 2018. pp. 580-8. (Lecture Notes in Computer Science; vols. 11071).","year":2018,"type":"Conference Paper (Paper)"},{"title":"Lu P, Barazzetti L, Chandran V, Gerber K, Weber S, Gerber N, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/155057\u0022\u003EHighly accurate Facial Nerve Segmentation Refinement from CBCT\/CT Imaging using a Super Resolution Classification Approach\u003C\/a\u003E. IEEE transactions on biomedical engineering. 2018 Jan.;65(1):178-8.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Jungo A, McKinley RI, Meier R, Knecht U, Vera L, P\u00e9rez-Beteta J, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/180457\u0022\u003ETowards uncertainty-assisted brain tumor segmentation and survival prediction\u003C\/a\u003E. In BORIS Portal; 2018. pp. 474-85. (Lecture Notes in Computer Science; vols. 10670).","year":2018,"type":"Conference Paper (Paper)"},{"title":"Balsiger F, Steindel C, Arn M, Wagner B, Grunder LN, El-Koussy M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/60010\u0022\u003ESegmentation of Peripheral Nerves From Magnetic Resonance Neurography: A Fully-Automatic, Deep Learning-Based Approach\u003C\/a\u003E. Frontiers in neurology. 2018;9(777):777.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Habegger S, Wiest RGR, Weder B, Mordasini PR, Gralla J, H\u00e4ni L, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/193239\u0022\u003ERelating Acute Lesion Loads to Chronic Outcome in Ischemic Stroke-An Exploratory Comparison of Mismatch Patterns and Predictive Modeling\u003C\/a\u003E. Frontiers in neurology. 2018;9(737):737.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Suter YR, Rummel C, Wiest RGR, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/63556\u0022\u003EFast and uncertainty-aware cerebral cortex morphometry estimation using random forest regression\u003C\/a\u003E. In IEEE; 2018. pp. 1052-5.","year":2018,"type":"Conference Paper (Paper)"},{"title":"Winzeck S, Hakim A, McKinley R, Pinto JAADSR, Alves V, Silva C, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/193240\u0022\u003EISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI\u003C\/a\u003E. Frontiers in neurology. 2018;9(679):679.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Jungo A, Meier R, Ermis E, Blatti MJ, Herrmann E, Wiest RGR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/180458\u0022\u003EOn the Effect of Inter-observer Variability for a Reliable Estimation of Uncertainty of Medical Image Segmentation\u003C\/a\u003E. In Springer; 2018. pp. 682-90. (Lecture Notes in Computer Science; vols. 11070).","year":2018,"type":"Conference Paper (Paper)"},{"title":"Jungo A, Meier R, Ermis E, Herrmann E, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/180456\u0022\u003EUncertainty-driven Sanity Check: Application to Postoperative Brain Tumor Cavity Segmentation\u003C\/a\u003E. In BORIS Portal; 2018.","year":2018,"type":"Conference Paper (Paper)"},{"title":"Pinto A, Pereira S, Meier R, Alves V, Wiest RGR, Silva CA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/181471\u0022\u003EEnhancing Clinical MRI Perfusion Maps with Data-Driven Maps of Complementary Nature for Lesion Outcome Prediction\u003C\/a\u003E. In: Frangi AF, Schnabel JA, Davatzikos C, Alberola-L\u00f3pez C, Fichtinger G, editors. Cham: Springer International Publishing; 2018. pp. 107-15. (Lecture Notes in Computer Science; vols. 11072).","year":2018,"type":"Conference Paper (Paper)"},{"title":"Kellner-Weldon F, Stippich C, Wiest RGR, Lehmann V, Meier R, Beck J, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/190334\u0022\u003EComparison of perioperative automated versus manual two-dimensional tumor analysis in glioblastoma patients\u003C\/a\u003E. European journal of radiology. 2017 Oct.;95:75-81.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Taghizadeh E, Chandran V, Reyes Aguirre MA, Zysset P, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/199207\u0022\u003EStatistical analysis of the inter-individual variations of the bone shape, volume fraction and fabric and their correlations in the proximal femur\u003C\/a\u003E. Bone. 2017 July 18;103:252-61.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Meier R, Porz N, Knecht U, Schucht P, Beck J, Slotboom J, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/147921\u0022\u003EAutomatic estimation of extent of resection and residual tumor volume of patients with glioblastoma\u003C\/a\u003E. Journal of neurosurgery. 2017 Jan. 6;127(4):798-806.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Gerber N, Reyes Aguirre MA, Barazzetti L, Kjer HM, Vera S, Stauber M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/154580\u0022\u003EA multiscale imaging and modelling dataset of the human inner ear\u003C\/a\u003E. Scientific data. 2017;4(170132):170132.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Chandran V, Reyes Aguirre MA, Zysset P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158721\u0022\u003EA novel registration-based methodology for prediction of trabecular bone fabric from clinical QCT: A comprehensive analysis\u003C\/a\u003E. PLoS ONE. 2017;12(11):e0187874.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Porz N, Habegger S, Meier R, Verma RK, Jilch A, Fichtner J, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/147275\u0022\u003EFully Automated Enhanced Tumor Compartmentalization: Man vs. Machine Reloaded\u003C\/a\u003E. PLoS ONE. 2016 Nov. 2;11(11):e0165302.","year":2016,"type":"Journal Article (Original Article)"},{"title":"Correa Shokiche C, Baumann P, Hlushchuk R, Djonov VG, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/151263\u0022\u003EHigh-Throughput Glomeruli Analysis of micro-CT Kidney Images Using Tree Priors and Scalable Sparse Computation\u003C\/a\u003E. In Cham: Springer International Publishing; 2016. pp. 370-8. (Lecture Notes in Computer Science; vols. 9901).","year":2016,"type":"Conference Paper (Paper)"},{"title":"Maier O, Menze BH, von der Gablentz J, H\u00e4ni L, Heinrich MP, Liebrand M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/192730\u0022\u003EISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI\u003C\/a\u003E. Medical image analysis. 2016 July 21;35:250-69.","year":2016,"type":"Journal Article (Original Article)"},{"title":"Seif M, Mani LY, Lu H, Boesch CH, Reyes Aguirre MA, Vogt B, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/140675\u0022\u003EDiffusion tensor imaging of the human kidney: Does image registration permit scanning without respiratory triggering\u003C\/a\u003E? Journal of magnetic resonance imaging. 2016 Feb. 12;44(2):na.","year":2016,"type":"Journal Article (Original Article)"},{"title":"Taghizadeh E, Reyes Aguirre MA, Zysset P, Latypova A, Terrier A, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/198215\u0022\u003EBiomechanical Role of Bone Anisotropy Estimated on Clinical CT Scans by Image Registration\u003C\/a\u003E. Annals of biomedical engineering. 2016 Jan. 20;44(8):2505-17.","year":2016,"type":"Journal Article (Original Article)"},{"title":"Lu P, Barazzetti L, Chandran V, Gerber K, Weber S, Gerber N, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/147926\u0022\u003ESuper-Resolution Classification Improves Facial Nerve Segmentation from CBCT Imaging\u003C\/a\u003E. BORIS Portal; 2016. pp. 143-4.","year":2016,"type":"Conference Paper (Abstract)"},{"title":"McKinley R, H\u00e4ni L, Gralla J, El-Koussy M, Bauer S, Arnold M, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/192804\u0022\u003EFully automated stroke tissue estimation using random forest classifiers (FASTER)\u003C\/a\u003E. Journal of cerebral blood flow and metabolism. 2016;37(8):2728-41.","year":2016,"type":"Journal Article (Original Article)"},{"title":"Meier R, Karamitsou V, Habegger S, Wiest RGR, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/150811\u0022\u003EParameter Learning for CRF-Based Tissue Segmentation of Brain Tumors\u003C\/a\u003E. In: Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. Cham: Springer International Publishing; 2016. pp. 156-67. (Lecture Notes in Computer Science; vols. 9556).","year":2016,"type":"Book Section"},{"title":"Meier R, Knecht U, Loosli T, Bauer S, Slotboom J, Wiest RGR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/141431\u0022\u003EClinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry\u003C\/a\u003E. Scientific Reports. 2016;6(23376):23376.","year":2016,"type":"Journal Article (Original Article)"},{"title":"Taghizadeh E, Kistler M, B\u00fcchler P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/198217\u0022\u003EFast Prediction of Femoral Biomechanics Using Supervised Machine Learning and Statistical Shape Modeling\u003C\/a\u003E. In: Joldes G, Doyle B, Wittek A, Nielsen P, Miller K, editors. Computational Biomechanics for Medicine X. Springer-Verlag New York; 2016. pp. 115-27.","year":2016,"type":"Book Section"},{"title":"Valenzuela WE, Ferguson SJ, Ignasiak D, Diserens G, H\u00e4ni L, Wiest RGR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/142629\u0022\u003EFISICO: Fast Image SegmentatIon COrrection\u003C\/a\u003E. PLoS ONE. 2016;11(5):e0156035.","year":2016,"type":"Journal Article (Original Article)"},{"title":"Taghizadeh E, Reyes Aguirre MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/198415\u0022\u003EStatistical Model of Bone Mechanical Properties\u003C\/a\u003E. BORIS Portal; 2015. p. 18.","year":2015,"type":"Conference Paper (Abstract)"},{"title":"Chandran V, Zysset P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/137752\u0022\u003EPrediction of Trabecular Bone Anisotropy from Quantitative Computed Tomography using Supervised Learning and a Novel Morphometric Feature Descriptor\u003C\/a\u003E. In: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015. 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part I. Springer International Publishing; 2015. pp. 621-8. (Lecture Notes in Computer Science; vols. 9349).","year":2015,"type":"Conference Paper (Paper)"},{"title":"Cerrolaza JJ, Reyes Aguirre MA, Summers RM, Gonz\u00e1lez-Ballester M\u00c1, Linguraru MG. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/135800\u0022\u003EAutomatic multi-resolution shape modeling of multi-organ structures\u003C\/a\u003E. Medical image analysis. 2015 Oct.;25(1):11-2.","year":2015,"type":"Journal Article (Original Article)"},{"title":"Chappuis V, Engel O, Shahim K, Reyes Aguirre MA, Katsaros C, Buser DA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/135801\u0022\u003ESoft Tissue Alterations in Esthetic Postextraction Sites: A 3-Dimensional Analysis\u003C\/a\u003E. Journal of dental research. 2015 Sept.;94(9):187S-193S.","year":2015,"type":"Journal Article (Original Article)"},{"title":"Lu P, Barazzetti L, Chandran V, Gerber K, Weber S, Gerber N, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/134934\u0022\u003EFacial Nerve Image Enhancement from CBCT using Supervised Learning Technique\u003C\/a\u003E. In: IEEE Engineering in Medicine and Biology Society conference proceedings. IEEE Service Center; 2015. pp. 2964-7.","year":2015,"type":"Conference Paper (Paper)"},{"title":"Seif M, Lu H, Boesch CH, Reyes Aguirre MA, Vermathen P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127908\u0022\u003EImage registration for triggered and non-triggered DTI of the human kidney: Reduced variability of diffusion parameter estimation\u003C\/a\u003E. Journal of magnetic resonance imaging. 2015 May;41(5):1228-35.","year":2015,"type":"Journal Article (Original Article)"},{"title":"Taghizadeh E, Latypova A, Maquer GB, Reyes Aguirre MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/198220\u0022\u003EIncluding anisotropic information of trabecular bone using image registration\u003C\/a\u003E. BORIS Portal; 2015.","year":2015,"type":"Conference Paper (Abstract)"},{"title":"Valenzuela WE, Ferguson SJ, Ignasiak D, Diserens G, Vermathen P, Boesch CH, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/139116\u0022\u003ECorrection tool for Active Shape Model based lumbar muscle segmentation\u003C\/a\u003E. In: IEEE Engineering in Medicine and Biology Society conference proceedings. IEEE Service Center; 2015. pp. 3033-6.","year":2015,"type":"Conference Paper (Paper)"},{"title":"Menze B, Reyes Aguirre MA, Van Leemput K, Porz N, Wiest RGR. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/130252\u0022\u003EThe Multimodal Brain TumorImage Segmentation Benchmark (BRATS)\u003C\/a\u003E. IEEE transactions on medical imaging. 2015;34(10):199-2024.","year":2015,"type":"Journal Article (Original Article)"},{"title":"Rios Velazquez E, Meier R, Dunn WD, Alexander B, Wiest RGR, Bauer S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/137035\u0022\u003EFully automatic GBM segmentation in the TCGA-GBM dataset: Prognosis and correlation with VASARI features\u003C\/a\u003E. Scientific Reports. 2015;5(16822):16822.","year":2015,"type":"Journal Article (Original Article)"},{"title":"Bonaretti S, Seiler C, Boichon C, Reyes Aguirre MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/197351\u0022\u003EImage-based vs. mesh-based statistical appearance models of the human femur: Implications for finite element simulations\u003C\/a\u003E. Medical engineering \u0026 physics. 2014 Dec.;36(12):1626-35.","year":2014,"type":"Journal Article (Original Article)"},{"title":"Cerrolaza JJ, Villanueva A, Reyes Aguirre MA, Cabeza R, Gonz\u00e1lez Ballester MA, Linguraru MG. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127909\u0022\u003EGeneralized Multiresolution Hierarchical Shape Models via Automatic Landmark Clusterization\u003C\/a\u003E. In: Golland P, Hata N, Barillot C, Hornegger J, Howe R, editors. BORIS Portal; 2014. pp. 1-8. (Lecture Notes in Computer Science; vols. 8675).","year":2014,"type":"Conference Paper (Paper)"},{"title":"Meier R, Bauer S, Slotboom J, Wiest RGR, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127910\u0022\u003EPatient-Specific Semi-Supervised Learning for Postoperative Brain Tumor Segmentation\u003C\/a\u003E. In Springer; 2014. pp. 714-21. (Lecture Notes in Computer Science; vols. 17).","year":2014,"type":"Conference Paper (Paper)"},{"title":"Gerig T, Shahim K, Reyes Aguirre MA, Vetter T, L\u00fcthi M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127911\u0022\u003ESpatially Varying Registration using Gaussian Processes\u003C\/a\u003E. In: Golland P, Hata N, Barillot C, Hornegger J, Howe R, editors. Springer; 2014. pp. 413-20. (Lecture Notes in Computer Science; vols. 8674).","year":2014,"type":"Conference Paper (Paper)"},{"title":"Seiler C, Gazdhar A, Reyes Aguirre MA, Benneker LM, Geiser T, Siebenrock KA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81704\u0022\u003ETime-lapse microscopy and classification of 2D human mesenchymal stem cells based on cell shape picks up myogenic from osteogenic and adipogenic differentiation\u003C\/a\u003E. Journal of tissue engineering and regenerative medicine. 2014;8(9):737-46.","year":2014,"type":"Journal Article (Original Article)"},{"title":"Bauer S, Wiest R, Slotboom J, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/124484\u0022\u003EAtlas-based Segmentation of Tumor-bearing Brain Images\u003C\/a\u003E. In: Hayat M, editor. Molecular Mechanisms, Children\u2019s Cancer, Treatments, and Radiosurgery. Dordrecht: Springer; 2014. pp. 159-6. (Tumors of the Central Nervous System; vols. 12).","year":2014,"type":"Book Section"},{"title":"Taghizadeh E, Maquer GB, Reyes Aguirre MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/197515\u0022\u003EIncluding the trabecular anisotropy from registered microCT data in homogenized FE model improves the bone\u2019s mechanical predictions\u003C\/a\u003E. CMBBE 2014; BORIS Portal; 2014.","year":2014,"type":"Conference Paper (Speech)"},{"title":"Bauer S, Porz N, Meier R, Pica A, Slotboom J, Wiest RGR, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127912\u0022\u003EInteractive Segmentation of MR Images from Brain Tumor Patients\u003C\/a\u003E. In Beijing: IEEE; 2014. pp. 862-5.","year":2014,"type":"Conference Paper (Paper)"},{"title":"Bauer S, Gratz PP, Gralla J, Reyes Aguirre MA, Wiest RGR. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127913\u0022\u003ETowards Automatic MRI Volumetry for Treatment Selection in Acute Ischemic Stroke Patients\u003C\/a\u003E. In BORIS Portal; 2014. pp. 1521-4.","year":2014,"type":"Conference Paper (Paper)"},{"title":"Chappuis V, Engel O, Reyes Aguirre MA, Shahim K, Nolte LP, Buser DA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/112732\u0022\u003ERidge alterations post-extraction in the esthetic zone: a 3D analysis with CBCT\u003C\/a\u003E. Journal of dental research. 2013 Dec.;92(12 Sup):195S-201S.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Shahim K, J\u00fcrgens P, Cattin PC, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/117972\u0022\u003EPrediction of Cranio-Maxilofacial Surgical Planning using an Inverse Soft Tissue Modelling Approach\u003C\/a\u003E. In Springer; 2013. pp. 18-25. (Lecture Notes in Computer Science; vols. 7908).","year":2013,"type":"Conference Paper (Paper)"},{"title":"Valenzuela WE, Vermathen P, Boesch CH, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/124483\u0022\u003EiSix - Image Segmentation in Osirix\u003C\/a\u003E. BORIS Portal; 2013.","year":2013,"type":"Conference Paper"},{"title":"J\u00fcrgens P, Shahim K, Cattin P, Zeilhofer HF, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/117976\u0022\u003EBackward-planning for orthognatic surgery - a new inverse modelling algorithm to define the hard-tissue position from a desired soft-tissue surface\u003C\/a\u003E. In: International journal of oral \u0026 maxillofacial surgery. Elsevier; 2013. p. 1331.","year":2013,"type":"Conference Paper (Paper)"},{"title":"Lu H, Beisteiner R, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/117975\u0022\u003EHierarchical segmentation-assisted multimodal registration for MR brain images\u003C\/a\u003E. Computerized medical imaging and graphics. 2013 Apr.;37(3):234-4.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Bauer S, Lu H, May C, Nolte LP, B\u00fcchler P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/197004\u0022\u003EIntegrated Segmentation of Brain Tumor Images for Radiotherapy and Neurosurgery\u003C\/a\u003E. International journal of imaging systems and technology. 2013 Mar.;23(1):59-63.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Bauer S, Fejes T, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/112256\u0022\u003EA Skull-Stripping Filter for ITK\u003C\/a\u003E. Insight journal. 2013 Jan. 21;2012.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Bou Sleiman H, Paul L, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/117974\u0022\u003EComparative Evaluation of Pelvic Allograft Selection Methods\u003C\/a\u003E. Annals of biomedical engineering. 2013;41(5):931-8.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Oliveira Dos Santos T, Baumberger C, Constantinescu MA, Olariu R, Nolte LP, Alaraibi S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/117973\u0022\u003E3D Face Reconstruction from 2D Pictures: First Results of a Web-Based Computer Aided System for Aesthetic Procedures\u003C\/a\u003E. Annals of biomedical engineering. 2013;41(5):952-66.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Bauer S, Tessier J, Krieter O, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127914\u0022\u003EIntegrated Spatio-Temporal Segmentation of Longitudinal Brain Tumor Imaging Studies\u003C\/a\u003E. In: Menze B, Langs G, Montillo A, Kelm M, M\u00fcller H, Tu Z, editors. Springer International Publishing; 2013. pp. 74-83. (Lecture Notes in Computer Science; vols. 8331).","year":2013,"type":"Conference Paper (Paper)"},{"title":"Ritacco LE, Seiler C, Farfalli GL, Nolte LP, Reyes Aguirre MA, Muscolo DL, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71345\u0022\u003EValidity of an automatic measure protocol in distal femur for allograft selection from a three-dimensional virtual bone bank system\u003C\/a\u003E. Cell and Tissue Banking. 2013;14(2):213-20.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Bauer S, Wiest RGR, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/89781\u0022\u003EA survey of MRI-based medical image analysis for brain tumor studies\u003C\/a\u003E. Physics in medicine and biology. Bristol: Institute of Physics Publishing IOP; 2013;58(13):R97-R129.","year":2013,"type":"Journal Article (Review)"},{"title":"Bou Sleiman H, Iizuka T, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/89162\u0022\u003EPopulation-based design of mandibular fixation plates with bone quality and morphology considerations\u003C\/a\u003E. Annals of biomedical engineering. 2013;41(2):377-84.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Kim BR, Oh KM, Cevidanes LH, Park JE, Sim HS, Seo SK, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81635\u0022\u003EAnalysis of 3D Soft Tissue Changes After 1- and 2-Jaw Orthognathic Surgery in Mandibular Prognathism Patients\u003C\/a\u003E. Journal of oral and maxillofacial surgery. 2013 Jan.;71(1):151-6.","year":2013,"type":"Journal Article (Original Article)"},{"title":"Shahim K, Goksel O, J\u00fcrgens P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/117977\u0022\u003EAccuracy Improvement In Cranio-Maxillofacial Soft Tissue Simulation Using A Muscle Embedded Meshing Approach\u003C\/a\u003E. In: IEEE Engineering in Medicine and Biology Society conference proceedings. IEEE Service Center; 2013. pp. 7156-9.","year":2013,"type":"Conference Paper (Paper)"},{"title":"Seif M, Lu H, Boesch CH, Reyes Aguirre MA, Vermathen P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81634\u0022\u003EImage co-registration for triggered and non-triggered DTI of the human kidney: Reduced variability of diffusion parameter estimation\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2012.","year":2012,"type":"Conference Paper (Paper)"},{"title":"Blanc R, Seiler C, Sz\u00e9kely G, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81640\u0022\u003EStatistical Model Based Shape Prediction from a Combination of Direct Observations and Various Surrogates. Application to Orthopaedic Research\u003C\/a\u003E. Medical image analysis. 2012;16(6):1156-6.","year":2012,"type":"Journal Article (Original Article)"},{"title":"Gerber K, Oliveira Dos Santos T, Peterhans M, Reyes Aguirre MA, Kim H, Weber S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/82378\u0022\u003EEvaluation of a portable image overlay projector for the visualisation of surgical navigation data: phantom studies\u003C\/a\u003E. International Journal of Computer Assisted Radiology and Surgery. 2012;7(4):547-56.","year":2012,"type":"Journal Article (Original Article)"},{"title":"Bou Sleiman H, Seiler C, Iizuka T, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81638\u0022\u003EPopulation-Based Design of Mandibular Plates Based on Bone Quality and Morphology\u003C\/a\u003E. In: Ayache N, Delingette H, Golland P, Mori K, editors. Berlin Heidelberg: Springer; 2012. pp. 66-73. (Lecture notes in computer science; vols. 15).","year":2012,"type":"Conference Paper (Paper)"},{"title":"Schulz AP, Reimers N, Wipf F, Vallotton M, Bonaretti S, Kozic N, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81636\u0022\u003EEvidence Based Development of a Novel Lateral Fibula Plate (VariAx Fibula) Using a Real CT Bone Data Based Optimization Process During Device Development\u003C\/a\u003E. Open orthopaedics journal. 2012;6(1):1-7.","year":2012,"type":"Journal Article (Original Article)"},{"title":"Lu H, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81637\u0022\u003EInterest points localization for brain image using landmark-annotated atlas\u003C\/a\u003E. International journal of imaging systems and technology. 2012;22(2):145.","year":2012,"type":"Journal Article (Original Article)"},{"title":"Lu H, Van der Zwaag W, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81633\u0022\u003EGeometric and Intensity EPI Distortion Correction for 7T fMRI Using Simultaneous Classification and Registration\u003C\/a\u003E. In BORIS Portal; 2012.","year":2012,"type":"Conference Paper (Paper)"},{"title":"L\u00fcthi M, Blanc R, Albrecht T, Gass T, Goksel O, B\u00fcchler P, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195949\u0022\u003EStatismo - A framework for PCA based statistical models\u003C\/a\u003E. Insight journal. 2012;:1.","year":2012,"type":"Journal Article (Original Article)"},{"title":"Seiler C, Pennec X, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81641\u0022\u003ECapturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees\u003C\/a\u003E. Medical image analysis. 2012;16(7):1371-84.","year":2012,"type":"Journal Article (Original Article)"},{"title":"De Heras Ciechomski P, Constantinescu MA, Garcia J, Olariu R, Dindoyal I, Le Huu S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/90316\u0022\u003EDevelopment and implementation of a web-enabled 3D consultation tool for breast augmentation surgery based on 3D-image reconstruction of 2D pictures\u003C\/a\u003E. Journal of medical internet research. 2012;14(1):e21.","year":2012,"type":"Journal Article (Original Article)"},{"title":"Seiler C, Pennec X, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/81639\u0022\u003ESimultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics\u003C\/a\u003E. In: Ayache N, Delingette H, Golland P, editors. Berlin Heidelberg: Springer; 2012. pp. 130-7. (Lecture Notes in Computer Science; vols. 15).","year":2012,"type":"Conference Paper (Paper)"},{"title":"Bauer S, Ritacco LE, Boesch CH, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/78097\u0022\u003EAutomatic Scan Planning for Magnetic Resonance Imaging of the Knee Joint\u003C\/a\u003E. Annals of biomedical engineering. 2012;40(9):2033-42.","year":2012,"type":"Journal Article (Original Article)"},{"title":"Kim YJ, Oh KM, Hong JS, Lee JH, Kim HM, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127917\u0022\u003EDo Patients Treated With Bimaxillary Surgery Have More Stable Condylar Positions Than Those Who Have Undergone Single-Jaw Surgery\u003C\/a\u003E? Journal of oral and maxillofacial surgery. 2011 Sept.;70(9):2143-52.","year":2011,"type":"Journal Article (Original Article)"},{"title":"Bou Sleiman H, Ritacco LE, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75300\u0022\u003EMinimization of Intra-Operative Shaping of Orthopaedic Fixation Plates: A Population-Based Design\u003C\/a\u003E. In: Fichtinger G, Martel A, Peters T, editors. Berlin Heidelberg: Springer; 2011. pp. 409-16. (Lecture Notes in Computer Science; vols. 14).","year":2011,"type":"Conference Paper (Paper)"},{"title":"Bou Sleiman H, Ritacco LE, Aponte-Tinao L, Muscolo DL, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75304\u0022\u003EAllograft Selection for Transepiphyseal Tumor Resection Around the Knee Using Three-Dimensional Surface Registration\u003C\/a\u003E. Annals of biomedical engineering. 2011;39(6):1720-7.","year":2011,"type":"Journal Article (Original Article)"},{"title":"Peterhans M, Frei D, Manser P, Reyes Aguirre MA, Fix M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75319\u0022\u003EMonte Carlo Dose Calculation on Deforming Anatomy\u003C\/a\u003E. Zeitschrift f\u00fcr medizinische Physik. 2011;21(2):113-23.","year":2011,"type":"Journal Article (Original Article)"},{"title":"Seiler C, Pennec X, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75301\u0022\u003EGeometry-Aware Multiscale Image Registration via OBBTree-Based Polyaffine Log-Demons\u003C\/a\u003E. In: Gabor F, Martel A, Peters T, editors. Berlin: Springer; 2011. pp. 631-8. (Lecture Notes in Computer Science; vols. 6892).","year":2011,"type":"Conference Paper (Paper)"},{"title":"Lu H, Cattin PC, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75305\u0022\u003EDiffusion weighted imaging distortion correction using hybrid multimodal image registration\u003C\/a\u003E. In IEEE Press; 2011. pp. 594-7. (IEEE International Symposium on Biomedical Imaging).","year":2011,"type":"Conference Paper (Paper)"},{"title":"Bauer S, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75299\u0022\u003EFully Automatic Segmentation of Brain Tumor Images using Support Vector Machine Classiffication in Combination with Hierarchical Conditional Random Field Regularization\u003C\/a\u003E. In: Fichtinger G, Martel A, Peters T, editors. Berlin: Springer; 2011. pp. 354-61. (Lecture Notes in Computer Science; vols. 6893).","year":2011,"type":"Conference Paper (Paper)"},{"title":"Seiler C, Pennec X, Ritacco LE, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75298\u0022\u003EFemur Specific Polyaffine Model to Regularize the Log-Domain Demons Registration\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2011. p. 79620G. (SPIE Proceedings; vols. 7962).","year":2011,"type":"Conference Paper (Paper)"},{"title":"Bauer S, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75303\u0022\u003ESegmentation of brain tumor images based on atlas-registration combined with a Markov-Random-Field lesion growth model\u003C\/a\u003E. In IEEE Press; 2011. pp. 2018-21.","year":2011,"type":"Conference Paper (Paper)"},{"title":"Juergens P, Klug C, Krol Z, Beinemann J, Kim H, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75302\u0022\u003ENavigation-Guided Harvesting of Autologous Iliac Crest Graft for Mandibular Reconstruction\u003C\/a\u003E. Journal of oral and maxillofacial surgery. 2011;69(11):2915-23.","year":2011,"type":"Journal Article (Original Article)"},{"title":"J\u00fcrgens P, Kim H, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127916\u0022\u003EApplication of a new soft-tissue simulation strategy based on a mimic muscle template model to predict the outcome in orthognatic surgery\u003C\/a\u003E. Vols. 40, International journal of oral \u0026 maxillofacial surgery. Elsevier; 2011. p. 1064.","year":2011,"type":"Conference Paper (Abstract)"},{"title":"Marias K, Dionysiou D, Sakkalis V, Graf N, Bohle R, Coveney P, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195632\u0022\u003EClinically driven design of multi-scale cancer models : the ContraCancrum project paradigm\u003C\/a\u003E. Interface - journal of the Royal Society. 2011;1(3):450-61.","year":2011,"type":"Journal Article (Original Article)"},{"title":"Kim HM, J\u00fcrgens P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/75297\u0022\u003ESoft-Tissue Simulation for Cranio-Maxillofacial Surgery: Clinical Needs and Technical Aspects\u003C\/a\u003E. In: Gefen A, editor. Patient-Specific Modeling in Tomorrow\u2019s Medicine. Berlin-Heidelberg: Springer; 2011. pp. 413-40. (Studies in Mechanobiology, Tissue Engineering and Biomaterials; vols. 09).","year":2011,"type":"Book Section"},{"title":"Bauer S, May C, Dionysiou D, Stamatakos G, B\u00fcchler P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195619\u0022\u003EMulti-Scale Modeling for Image Analysis of Brain Tumor Studies\u003C\/a\u003E. IEEE transactions on biomedical engineering. 2011;59(1):25-9.","year":2011,"type":"Journal Article (Original Article)"},{"title":"J\u00fcrgens P, Kim H, Forter S, Beinemann J, Zeilhofer H, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127915\u0022\u003EThree-dimensional control of maxillary position--validation of a 3-d real time navigational prototype system for routine application in orthognathic surgery\u003C\/a\u003E. Vols. 40, International journal of oral \u0026 maxillofacial surgery. Elsevier; 2011. p. 1064.","year":2011,"type":"Conference Paper (Abstract)"},{"title":"Bonaretti S, Seiler C, Boichon C, B\u00fcchler P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195618\u0022\u003EMesh-based vs. Image-based Statistical Appearance Model of the Human Femur: a Preliminary Comparison Study for the Creation of Finite Element Meshes\u003C\/a\u003E. In BORIS Portal; 2011.","year":2011,"type":"Conference Paper (Paper)"},{"title":"Seiler C, Gazdhar A, Geiser T, Reyes Aguirre MA, Gantenbein B. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127922\u0022\u003EMesenchymal Stem Cell Classification during Differentiation Based on Shape Information\u003C\/a\u003E. BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Abstract)"},{"title":"Lu H, Reyes Aguirre MA, S\u030cerifovic\u0301 A, Weber S, Sakurai Y, Yamagata H, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71350\u0022\u003EMulti-modal diffeomorphic demons registration based on point-wise mutual information\u003C\/a\u003E. In IEEE; 2010. pp. 372-5.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Kim HM, J\u00fcrgens P, Cattin P, Weber S, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71343\u0022\u003EPatient-specific, Fast Soft-Tissue Simulation for Cranio-Maxillofacial Surgery\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Bardyn T, Reyes Aguirre MA, Larrea X, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195606\u0022\u003EInfluence of Smoothing on Voxel-Based Mesh Accuracy in Micro-Finite Element\u003C\/a\u003E. In: Miller K, Nielsen PMF, editors. Computational Biomechanics for Medicine. New York: Springer; 2010. pp. 85-93.","year":2010,"type":"Book Section"},{"title":"Bonaretti S, Helgason B, Seiler C, Kistler M, Reyes Aguirre MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195601\u0022\u003EA statistical shape model of bone anatomical variability for finite element assessment of bone mechanics\u003C\/a\u003E. BORIS Portal; 2010. p. 2008.","year":2010,"type":"Conference Paper"},{"title":"Oliveira Dos Santos T, Weitzel T, Klaeser B, Krause T, Nolte LP, Weber S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/73553\u0022\u003EMultimodal target correction by local bone registration: a PET\/CT evaluation\u003C\/a\u003E. IEEE Engineering in Medicine and Biology Society conference proceedings. 2010;2010:5616-9.","year":2010,"type":"Journal Article (Original Article)"},{"title":"Oliveira Dos Santos T, Peterhans M, Roth B, Thalmann G, Reyes Aguirre MA, Nolte LP, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71364\u0022\u003EComputer Aided Surgery for Percutaneous Nephrolithotomy: Clinical Requirement Analysis and System Design\u003C\/a\u003E. In BORIS Portal; 2010. pp. 442-5.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Seiler C, Gazdhar A, Geiser T, Reyes Aguirre MA, Gantenbein B. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71349\u0022\u003EMesenchymal Stem Cell Classification during Differentiation Based on Shape Information\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Cevidanes L, Tucker S, Styner M, Kim HM, Chapuis J, Reyes Aguirre MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71344\u0022\u003EThree-dimensional surgical simulation\u003C\/a\u003E. American journal of orthodontics and dentofacial orthopedics. 2010;138(3):361-7.","year":2010,"type":"Journal Article (Original Article)"},{"title":"Marias K, Sakkalis V, Roniotis A, Karatzanis I, Stamatakos G, Dionysiou D, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127920\u0022\u003ECONTRACANCRUM AT THE PROJECT LEVEL: Clinically Oriented Translational Cancer Multilevel Modelling\u003C\/a\u003E. In: Stamatakos G, Dionysiou D, editors. BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Bou Sleiman H, Ritacco LE, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71340\u0022\u003EComputer-assisted allograft selection for transepiphyseal tumor resection at the knee\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Kim HM, J\u00fcrgens P, Weber S, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71346\u0022\u003EA New Soft-Tissue Simulation Strategy for Cranio-Maxillofacial Surgery Using Facial Muscle Template Model\u003C\/a\u003E. Progress in biophysics and molecular biology. 2010;103(2-3):284-91.","year":2010,"type":"Journal Article (Original Article)"},{"title":"Tucker S, Cevidanes L, Styner M, Kim HM, Reyes Aguirre MA, Proffit W, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71347\u0022\u003EComparison of actual surgical outcomes and 3-dimensional surgical simulations\u003C\/a\u003E. Journal of oral and maxillofacial surgery. 2010;68(10):2412-21.","year":2010,"type":"Journal Article (Original Article)"},{"title":"Kozic N, Weber S, B\u00fcchler P, Lutz C, Reimers N, Gonz\u00e1lez Ballester MA, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195589\u0022\u003EOptimisation of orthopaedic implant design using statistical shape space analysis based on level sets\u003C\/a\u003E. Medical image analysis. 2010;14(3):265-7.","year":2010,"type":"Journal Article (Original Article)"},{"title":"Bonaretti S, Reyes Aguirre MA, Kistler M, Seiler C, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195588\u0022\u003ECombined statistical model of bone shape and mechanical properties for bone and implant modeling\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Bauer S, Seiler C, Bardyn T, B\u00fcchler P, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195587\u0022\u003EAtlas-Based Segmentation of Brain Tumor Images Using a Markov Random Field-Based Tumor Growth Model and Non-Rigid Registration\u003C\/a\u003E. In IEEE; 2010. pp. 4080-3.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Gonz\u00e1lez Ballester MA, Kozic N, Summers RM, Linguraru MG. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71342\u0022\u003EHierarchical Patch Generation for Multi-level Statistical Shape Analysis by Principal Factor Analysis Decomposition\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2010. pp. 157-6. (Proceedings of SPIE; vols. 7626).","year":2010,"type":"Conference Paper (Paper)"},{"title":"Kim HM, J\u00fcrgens P, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71348\u0022\u003EAnatomically-Driven Soft-Tissue Simulation Strategy for Cranio-Maxillofacial Surgery Using Facial Muscle Template Model\u003C\/a\u003E. In: Jiang T, Navab N, Pluim J, Viergever M, editors. Heidelberg: Springer; 2010. pp. 61-8. (Lecture Notes in Computer Science; vols. 6361).","year":2010,"type":"Conference Paper (Paper)"},{"title":"Dong X, Lu H, Sakurai Y, Yamagata H, Zheng G, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71381\u0022\u003EAutomated Intervertebral Disc Detection from Low Resolution, Sparse MRI Images for the Planning of Scan Geometries\u003C\/a\u003E. In: Wang F, Yan P, Suzuki K, Shen D, editors. Machine Learning in Medical Imaging. Berlin: Springer; 2010. pp. 10-7. (Lecture Notes in Computer Science; vols. 6357).","year":2010,"type":"Conference Paper (Paper)"},{"title":"Bauer S, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127921\u0022\u003EA Markov-Random-Field-Based Biomechanical Tumor Growth Model for Atlas-Based Segmentation of Brain Tumor Images\u003C\/a\u003E. In BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Lu H, Cattin PC, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71339\u0022\u003EA Hybrid Multimodal Non-Rigid Registration of MR Images Based on Diffeomorphic Demons\u003C\/a\u003E. In IEEE; 2010. pp. 5951-4.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Stamatakos G, Dionysiou D, Kolokotroni E, Georgiadi E, Roniotis A, Sakkalis V, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127918\u0022\u003ECONTRA CANCRUM AT THE PROJECT LEVEL: The ContraCancrum Oncosimulator: Integrating Biomechanisms Across Scales in the Clinical Context\u003C\/a\u003E. In: Stamatakos G, Dionysiou D, editors. BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"May C, Bardyn T, Reyes Aguirre MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/195596\u0022\u003EBiomechanical model of tumor growth: application to the European ContraCancrum project\u003C\/a\u003E. In: Stamatakos G, Dionysiou D, editors. Vancouver, Canada: BORIS Portal; 2010. p. 73.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Kim HM, J\u00fcrgens P, Cattin P, Weber S, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71341\u0022\u003EFast soft-tissue simulation method for cranio-maxillofacial surgery using facial muscle template models\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Marias K, Sakkalis V, Roniotis A, Karatzanis I, Stamatakos G, Dionysiou D, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127919\u0022\u003EClinically Oriented Translational Cancer Multilevel Modelling: The ContraCancrum project\u003C\/a\u003E. BORIS Portal; 2010.","year":2010,"type":"Conference Paper (Abstract)"},{"title":"Kozic N, Weber S, Gonzalez Ballester MA, Abdo G, Rufenacht D, Ferguson SJ, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/73496\u0022\u003EAutomated cement segmentation in vertebroplasty\u003C\/a\u003E. Computer aided surgery. 2010;15(1-3):49-55.","year":2010,"type":"Journal Article (Original Article)"},{"title":"Seiler C, Pennec X, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/71351\u0022\u003EParametric regression of 3D medical images through the exploration of non-parametric regression models\u003C\/a\u003E. In IEEE Press; 2010. pp. 452-5.","year":2010,"type":"Conference Paper (Paper)"},{"title":"Blanc R, Reyes Aguirre MA, Seiler C, Sz\u00e9kely G. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/104020\u0022\u003EConditional variability of statistical shape models based on surrogate variables\u003C\/a\u003E. In Springer; 2009. pp. 84-91. (Lecture Notes in Computer Science).","year":2009,"type":"Conference Paper (Paper)"},{"title":"Bardyn T, Reyes Aguirre MA, Boyd S, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196469\u0022\u003EInfluence of smoothing on voxel-based mesh accuracy in micro finite-element\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2009. pp. 78-86.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Bardyn T, Reyes Aguirre MA, Boyd S, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196474\u0022\u003EAutomatic Finite Element Mesh Generation and Correction from 3D Image Data\u003C\/a\u003E. In BORIS Portal; 2009. p. 1873.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Schmidt W, Reyes Aguirre MA, Fischer F, Geesink R, Nolte LP, Racanelli J, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/104022\u0022\u003EQuantifying human knee anthropometric differences between ethnic groups and gender using shape analysis\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2009. pp. 26-9.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Seiler C, B\u00fcchler P, Nolte LP, Reyes Aguirre MA, Paulsen R. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196480\u0022\u003EHierarchical Markov Random Fields Applied to Model Soft Tissue Deformations on Graphics Hardware\u003C\/a\u003E. In: Magnenat-Thalmann N, Zhang JJ, Feng DD, editors. Recent Advances in the 3D Physiological Human. Heidelberg: Springer Verlag; 2009. pp. 133-48.","year":2009,"type":"Book Section"},{"title":"Kozic N, Gonzalez Ballester MA, B\u00fcchler P, Reimers N, Nolte LP, Linguraru MG, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196468\u0022\u003EPopulation-specific evaluation of implant bone fitting using PCA shape space and level sets\u003C\/a\u003E. In BORIS Portal; 2009. pp. 883-6.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Marias K, Sakkalis V, Roniotis A, Farmaki C, Stamatakos G, Dionysiou D, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196478\u0022\u003EClinically Oriented Translational Cancer Multilevel Modeling: The ContraCancrum Project\u003C\/a\u003E. In BORIS Portal; 2009. pp. 2124-7.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Gonzalez Ballester MA, Li Z, Kozic N, Chin S, Summers RM, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/104019\u0022\u003EAnatomical variability of organs via principal factor analysis from the construction of an abdominal probabilistic atlas\u003C\/a\u003E. In BORIS Portal; 2009. pp. 682-5.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Santos T, Weitzel T, Klaeser B, Reyes Aguirre MA, Weber S. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/104031\u0022\u003EIntroducing computer-assisted surgery into combined PET\/CT based biopsy treatments\u003C\/a\u003E. In BORIS Portal; 2009. pp. 308-11.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Kim HM, J\u00fcrgens P, Nolte LP, Weber S, Zeilhofer HF, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/104018\u0022\u003EAnatomically considered, fast soft-tissue simulation for cranio-maxillofacial surgery\u003C\/a\u003E. In BORIS Portal; 2009.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Bonaretti S, B\u00fcchler P, Reimers N, Schmidt W, Seiler C, Weber S, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196470\u0022\u003EAutomatic bone density evaluation from CT images\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2009. pp. 625-7.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Seiler C, Weber S, Schmidt W, Fischer F, Reimers N, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/104021\u0022\u003EAutomatic landmark propagation for left and right symmetry assessment of tibia and femur: A computational anatomy based approach\u003C\/a\u003E. In Vancouver, Canada: BORIS Portal; 2009. pp. 195-8.","year":2009,"type":"Conference Paper (Paper)"},{"title":"Kozic N, Reyes Aguirre MA, Tannast M, Nolte LP, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127931\u0022\u003EAssesment of anatomical criteria across populations using statistical shape models and level sets\u003C\/a\u003E. BORIS Portal; 2008. pp. 46-9.","year":2008,"type":"Conference Paper (Abstract)"},{"title":"Reyes Aguirre MA, Gonzalez Ballester MA, Li Z, Kozic N, Summers RM, Linguraru MG. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/100534\u0022\u003EInterpretability of anatomical variability analysis of abdominal organs via clusterization of decomposition modes\u003C\/a\u003E. In IEEE; 2008. pp. 355-8. (IEEE Engineering in Medicine and Biology Society Conference Proceedings).","year":2008,"type":"Conference Paper (Paper)"},{"title":"Bonaretti S, Reimers N, Rueckert D, Reyes Aguirre MA, Gonzalez Ballester MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196439\u0022\u003EStatistical finite element analysis for bone modeling\u003C\/a\u003E. In: Journal of biomechanics. Elsevier; 2008. p. S369.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Kozic N, Reyes Aguirre MA, Tannast M, Nolte LP, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/101910\u0022\u003EAssessment of anatomical criteria across populations using statistical shape models and level sets\u003C\/a\u003E. In BORIS Portal; 2008. pp. 46-9.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Kozic N, Reyes Aguirre MA, Nolte LP, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/100533\u0022\u003EGlobal Optimisation in PCA Shape Space Using Level Sets\u003C\/a\u003E. In BORIS Portal; 2008. pp. S109-S110.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Linguraru M, Nolte LP, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/102020\u0022\u003EClusterization of deformation modes for quantitative evaluation on factor analysis techniques on statistical shape modelling\u003C\/a\u003E. In BORIS Portal; 2008. pp. 185-92.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Bonaretti S, Reimers N, Lutz C, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/100535\u0022\u003EEvidence-based implant design using statistical bone model and automated implant fitting\u003C\/a\u003E. In BORIS Portal; 2008. pp. 379-81.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Larrea X, Reyes Aguirre MA, Boyd S, B\u00fcchler P, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/197355\u0022\u003EAutomatic mesh smoothing for finite element modelling from 3D image data\u003C\/a\u003E. BORIS Portal; 2008.","year":2008,"type":"Conference Paper (Abstract)"},{"title":"Larrea X, Reyes Aguirre MA, Boyd S, B\u00fcchler P, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196444\u0022\u003EAutomatic Mesh Smoothing For Finite Element Modeling From 3d Image Data\u003C\/a\u003E. In BORIS Portal; 2008. p. S275.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Bonaretti S, Reimers N, Reyes Aguirre MA, Nikitsin A, Joensson A, Nolte LP, et al. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196451\u0022\u003EAssessment of Peri-Articular Implant Fitting Based on Statistical Finite Element Modeling\u003C\/a\u003E. In BORIS Portal; 2008. pp. 138-47.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Kozic N, Gonzalez Ballester MA, Tannast M, Nolte LP, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/100532\u0022\u003EStatistical Shape Space Analysis Based on Level Sets\u003C\/a\u003E. In: Dohi T, Sakuma I, Liao H, editors. BORIS Portal; 2008. pp. 160-7. (Lecture Notes in Computer Science; vols. 5128).","year":2008,"type":"Conference Paper (Paper)"},{"title":"Linguraru M, Vercauteren T, Reyes Aguirre MA, Gonzalez Ballester MA, Ayache N. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/100537\u0022\u003ESegmentation Propagation from Deformable Atlases for Brain Mapping and Analysis\u003C\/a\u003E. In BORIS Portal; 2008. pp. 269-87.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Larrea X, Boyd S, Gonzalez Ballester MA, B\u00fcchler P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/196441\u0022\u003EConstrained hexahedral mesh smoothing for finite element modelling from 3D image datag\u003C\/a\u003E. In BORIS Portal; 2008.","year":2008,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/97822\u0022\u003EClustering of deformation modes for quantitative evaluation of statistical shape models\u003C\/a\u003E. In BORIS Portal; 2007. pp. 271-3.","year":2007,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Linguraru MG, Marias K, Ayache N, Nolte LP, Gonzalez Ballester MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/97825\u0022\u003EStatistical shape analysis via principal factor analysis\u003C\/a\u003E. In Washington DC, USA: IEEE; 2007. pp. 1216-9.","year":2007,"type":"Conference Paper (Paper)"},{"title":"Linguraru MG, Vercauteren T, Reyes Aguirre MA, Gonz\u00e1lez-Ballester M\u00c1, Ayache N. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127924\u0022\u003ESegmentation propagation from deformable atlases for brain mapping and analysis\u003C\/a\u003E. Brain Research Journal. 2007;1(4):269-87.","year":2007,"type":"Journal Article (Original Article)"},{"title":"Reyes Aguirre MA, Malandain G, Koulibaly P, Gonzalez Ballester MA, Darcourt J. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/97818\u0022\u003EModel-based respiratory motion compensation for emission tomography image reconstruction\u003C\/a\u003E. Physics in medicine and biology. 2007;52(12):3579-600.","year":2007,"type":"Journal Article (Original Article)"},{"title":"Reyes Aguirre MA, Gonz\u00e1lez-Ballester M, Linguraru M. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127925\u0022\u003EStatistical Bone Shape Analysis for Image Free Surgery\u003C\/a\u003E. Acta Universitatis Cibiniensis, Technical Series. 2007;LV:121-9.","year":2007,"type":"Journal Article (Original Article)"},{"title":"Malandain G, Reyes Aguirre MA. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127930\u0022\u003ELa tomographie en mouvement\u003C\/a\u003E. Pour la science. 2005 Dec.;338:132-7.","year":2005,"type":"Magazine Article"},{"title":"Reyes Aguirre MA, Malandain G, Koulibaly PM, Darcourt J. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127926\u0022\u003ERespiratory motion correction in emission tomography imaging\u003C\/a\u003E. In BORIS Portal; 2005.","year":2005,"type":"Conference Paper (Paper)"},{"title":"Gonzalez Ballester MA, Linguraru MG, Reyes Aguirre MA, Ayache N. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127928\u0022\u003EOn the adequacy of principal factor analysis for the study of shape variability\u003C\/a\u003E. In: Fitzpatrick JM, Reinhardt JM, editors. SPIE Publishing; 2005. p. 1392. (Proceeding SPIE; vols. 5747).","year":2005,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Malandain G, Ayache N, Darcourt J, Koulibaly P. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127929\u0022\u003ERespiratory motion compensation within emission tomographic reconstruction\u003C\/a\u003E. BORIS Portal; 2005.","year":2005,"type":"Conference Paper (Abstract)"},{"title":"Reyes Aguirre MA, Malandain G, Koulibaly PM, Gonzalez Ballester MA, Darcourt J. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127927\u0022\u003ERespiratory motion correction in emission tomography image reconstruction\u003C\/a\u003E. In: Duncan J, Gerig G, editors. Verlag: Springer; 2005. pp. 369-76. (Lecture Notes in Computer Science; vols. 3750).","year":2005,"type":"Conference Paper (Paper)"},{"title":"Reyes Aguirre MA, Malandain G, Darcourt J. \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/127932\u0022\u003ERespiratory movement correction in emission tomography\u003C\/a\u003E. Le Chesnay Cedex: Inria Sophia Antipolis; 2004 July. (Th\u00e8me BIO; vols. 5279).","year":2004,"type":"Report"}]}

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Reyes, Mauricio