UCI – Das Tumorzentrum Bern - Navigation

Rubin, Mark Andrew

{"headers":{"title":"Title","year":"Year","type":"Type"},"rows":[{"title":"Khani, F., Beg, S., Park, K., Kawaguchi, K., Chiu, Y.-L., Robinson, B. D., Lis, R., Stack, E. C., Scherr, D. S., Rosenberg, J. E., Loda, M., Chinnaiyan, A. M., Rubin, M. A., \u0026 Mosquera, J. M. (2025). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/214527\u0022\u003ESPINK1 immunohistochemistry: An ancillary tool to diagnose urothelial carcinoma in situ and urothelial dysplasia\u003C\/a\u003E. \u003Ci\u003EPathology - Research and Practice\u003C\/i\u003E, \u003Ci\u003E273\u003C\/i\u003E, 156148.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Bhinder, B., Friedl, V., Sethuraman, S., Risso, D., Chiotti, K. E., Mashl, R. J., Ellrott, K. P., Lee, J. A., Wong, C. K., Gyan, K., Deshpande, A., Imielinski, M., Bareja, R., Stuart, J., Peto, M., Hoadley, K. A., Lazar, A. J., Cherniack, A. D., Zhu, J., \u2026 Elemento, O. (2025). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/212810\u0022\u003EPan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles\u003C\/a\u003E. \u003Ci\u003EScientific Reports\u003C\/i\u003E, \u003Ci\u003E15\u003C\/i\u003E(1), 23921.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Dutta, A., Rodriguez-Calero, A., Ronaldson-Bouchard, K., Offermann, A., Rahman, D., Vhatkar, T. B., Hasson, D., Alshalalfa, M., Davicioni, E., Karnes, R. J., Rubin, M. A., Vunjak-Novakovic, G., Abate-Shen, C., \u0026 Arriaga, J. M. (2025). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/204682\u0022\u003EATAD2 Drives Prostate Cancer Progression to Metastasis\u003C\/a\u003E. \u003Ci\u003EMolecular Cancer Research\u003C\/i\u003E, \u003Ci\u003E23\u003C\/i\u003E(5), 379-390.","year":2025,"type":"Journal Article (Original Article)"},{"title":"Haffner, M. C., Morris, M. J., Ding, C.-K. C., Sayar, E., Mehra, R., Robinson, B., True, L. D., Gleave, M., Lotan, T. L., Aggarwal, R., Huang, J., Loda, M., Nelson, P. S., Rubin, M. A., \u0026 Beltran, H. (2025). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/191392\u0022\u003EFramework for the Pathology Workup of Metastatic Castration-Resistant Prostate Cancer Biopsies\u003C\/a\u003E. \u003Ci\u003EClinical Cancer Research\u003C\/i\u003E, \u003Ci\u003E31\u003C\/i\u003E(3), 466-478.","year":2025,"type":"Journal Article (Further Contribution)"},{"title":"Triscott, J., Lehner, M., Benjak, A., Reist, M., Emerling, B. M., Ng, C. K. Y., De Brot, S., \u0026 Rubin, M. A. (2024). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/189028\u0022\u003ELoss of PI5P4K\u03b1 slows the progression of a Pten mutant basal cell model of prostate cancer\u003C\/a\u003E. \u003Ci\u003EMolecular Cancer Research\u003C\/i\u003E, \u003Ci\u003E23\u003C\/i\u003E(1), 33-45.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Akhoundova Sanoyan, D., Fischer, S., Triscott, J. C. C., Lehner, M., Thienger, P. D., Maletti, S. L., Jacquet, M., Lubis, D. S. H., Bubendorf, L., Jochum, W., \u0026 Rubin, M. A. (2024). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/178312\u0022\u003ERare histologic transformation of a CTNNB1 (\u03b2-catenin) mutated prostate cancer with aggressive clinical course\u003C\/a\u003E. \u003Ci\u003EDiagnostic Pathology\u003C\/i\u003E, \u003Ci\u003E19\u003C\/i\u003E(1).","year":2024,"type":"Journal Article (Further Contribution)"},{"title":"Papachristodoulou, A., Heidegger, I., Virk, R. K., Di Bernardo, M., Kim, J. Y., Laplaca, C., Picech, F., Sch\u00e4fer, G., De Castro, G. J., Hibshoosh, H., Loda, M., Klocker, H., Rubin, M. A., Zheng, T., Benson, M. C., McKiernan, J. M., Dutta, A., \u0026 Abate-Shen, C. (2024). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/169728\u0022\u003EMetformin Overcomes the Consequences of NKX3.1 Loss to Suppress Prostate Cancer Progression\u003C\/a\u003E. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E85\u003C\/i\u003E(4), 361-372.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Augspach, A. K., \u0026 Rubin, M. A. (2024). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/174291\u0022\u003EUpcycling HOXB13: enhancing prostate cancer detection with a novel antibody\u2020\u003C\/a\u003E. \u003Ci\u003EThe Journal of Pathology: Clinical Research\u003C\/i\u003E, \u003Ci\u003E262\u003C\/i\u003E(4), 391-394.","year":2024,"type":"Journal Article (Further Contribution)"},{"title":"Akhoundova Sanoyan, D., Francica, P., Rottenberg, S., \u0026 Rubin, M. A. (2024). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/171761\u0022\u003EDNA Damage Response and Mismatch Repair Gene Defects in Advanced and Metastatic Prostate Cancer\u003C\/a\u003E. \u003Ci\u003EAdvances in Anatomic Pathology\u003C\/i\u003E, \u003Ci\u003E31\u003C\/i\u003E(2), 61-69.","year":2024,"type":"Journal Article (Original Article)"},{"title":"Akhoundova Sanoyan, D., \u0026 Rubin, M. A. (2024). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/173272\u0022\u003EThe grand challenge of moving cancer whole-genome sequencing into the clinic\u003C\/a\u003E. \u003Ci\u003ENature Medicine\u003C\/i\u003E, \u003Ci\u003E30\u003C\/i\u003E(1), 39-40.","year":2024,"type":"Journal Article (Further Contribution)"},{"title":"Bratic Hench, I., Roma, L., Conticelli, F., Bubendorf, L., Calgua, B., Le Magnen, C., Piscuoglio, S., Rubin, M. A., Chirindel, A., Nicolas, G. P., Vlajnic, T., Zellweger, T., Templeton, A. J., Stenner, F., Ruiz, C., Rentsch, C., \u0026 Bubendorf, L. (2024). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/173320\u0022\u003ECell-Free DNA Genomic Profiling and Its Clinical Implementation in Advanced Prostate Cancer\u003C\/a\u003E. \u003Ci\u003ECancers\u003C\/i\u003E, \u003Ci\u003E16\u003C\/i\u003E(1).","year":2024,"type":"Journal Article (Original Article)"},{"title":"Van Emmenis, L., Ku, S.-Y., Gayvert, K., Branch, J. R., Brady, N. J., Basu, S., Russell, M., Cyrta, J., Vosoughi, A., Sailer, V., Alnajar, H., Dardenne, E., Koumis, E., Puca, L., Robinson, B. D., Feldkamp, M. D., Winkis, A., Majewski, N., Rupnow, B., \u2026 Rickman, D. S. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/169111\u0022\u003EThe Identification of CELSR3 and Other Potential Cell Surface Targets in Neuroendocrine Prostate Cancer\u003C\/a\u003E. \u003Ci\u003ECancer Research Communications\u003C\/i\u003E, \u003Ci\u003E3\u003C\/i\u003E(8), 1447-1459.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Li, J. J., Vasciaveo, A., Karagiannis, D., Sun, Z., Chen, X., Socciarelli, F., Frankenstein, Z., Zou, M., Pannellini, T., Chen, Y., Gardner, K., Robinson, B. D., de Bono, J., Abate-Shen, C., Rubin, M. A., Loda, M., Sawyers, C. L., Califano, A., Lu, C., \u0026 Shen, M. M. (2023). \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/172996\u0022\u003ENSD2 maintains lineage plasticity and castration-resistance in neuroendocrine prostate cancer\u003C\/a\u003E.\u003C\/i\u003E Cold Spring Harbor Laboratory.","year":2023,"type":"Working Paper"},{"title":"Augspach, A. K., Drake, K. D., Roma, L., Qian, E., Lee, S. R., Clarke, D., Kumar, S., Jaquet, M., Gallon, J., Bolis, M., Triscott, J. C. C., Galv\u00e1n Hern\u00e1ndez, J. A., Chen, Y., Thalmann, G., Kruithof-de Julio, M., Theurillat, J.-P. P., Wuchty, S., Gerstein, M., Piscuoglio, S., \u2026 Rubin, M. A. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/167753\u0022\u003EMinor intron splicing is critical for survival of lethal prostate cancer\u003C\/a\u003E. \u003Ci\u003EMolecular Cell\u003C\/i\u003E, \u003Ci\u003E83\u003C\/i\u003E(12), 1983-2002e11.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Gillessen, S., Bossi, A., Davis, I. D., de Bono, J., Fizazi, K., James, N. D., Mottet, N., Shore, N., Small, E., Smith, M., Sweeney, C. J., Tombal, B., Antonarakis, E. S., Aparicio, A. M., Armstrong, A. J., Attard, G., Beer, T. M., Beltran, H., Bjartell, A., \u2026 Omlin, A. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/172987\u0022\u003EManagement of patients with advanced prostate cancer-metastatic and\/or castration-resistant prostate cancer: Report of the Advanced Prostate Cancer Consensus Conference (APCCC) 2022\u003C\/a\u003E. \u003Ci\u003EEuropean Journal of Cancer\u003C\/i\u003E, \u003Ci\u003E185\u003C\/i\u003E, 178-215.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Gallon, J., Rodr\u00edguez Calero, J. A., Benjak, A., Akhoundova Sanoyan, D., Maletti, S. L., Amstutz, U., Hewer, E. W., Genitsch Gratwohl, V., Fleischmann, A., Rushing, E. J., Grobholz, R., Fischer, I., Jochum, W., Cathomas, G., Osunkoya, A. O., Bubendorf, L., Moch, H., Thalmann, G., Feng, F. Y., \u2026 Piscuoglio, S. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/121406\u0022\u003EDNA methylation landscapes of prostate cancer brain metastasis are shaped by early driver genetic alterations\u003C\/a\u003E. \u003Ci\u003ECancer Research\u003C\/i\u003E, \u003Ci\u003E83\u003C\/i\u003E(8), 1203-1213.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Planas-Paz, L., Pliego-Mendieta, A., Hagedorn, C., Aguilera-Garcia, D., Haberecker, M., Arnold, F., Herzog, M., Bankel, L., Guggenberger, R., Steiner, S., Chen, Y., Kahraman, A., Zoche, M., Rubin, M. A., Moch, H., Britschgi, C., \u0026 Pauli, C. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/172888\u0022\u003EUnravelling homologous recombination repair deficiency and therapeutic opportunities in soft tissue and bone sarcoma\u003C\/a\u003E. \u003Ci\u003EEMBO Molecular Medicine\u003C\/i\u003E, \u003Ci\u003E15\u003C\/i\u003E(4), e16863.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Kashani, E., Schnidrig, D., Hashemi Gheinani, A., Ninck, M. S., Zens, P. I., Maragkou, T., Baumgartner, U., Schucht, P., R\u00e4tsch, G., Rubin, M. A., Berezowska, S. A., Ng, K. Y. C., \u0026 Vassella, E. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/87598\u0022\u003EIntegrated longitudinal analysis of adult grade 4 diffuse gliomas with long-term relapse interval revealed upregulation of TGF-\u03b2 signaling in recurrent tumors\u003C\/a\u003E. \u003Ci\u003ENeuro-Oncology\u003C\/i\u003E, \u003Ci\u003E25\u003C\/i\u003E(4), 662-673.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Netto, G. J., Amin, M. B., Comp\u00e9rat, E. M., Gill, A. J., Hartmann, A., Moch, H., Menon, S., Raspollini, M. R., Rubin, M. A., Srigley, J. R., Hoon Tan, P., Tickoo, S. K., Tsuzuki, T., Turajlic, S., Cree, I., \u0026 Berney, D. M. (2023). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/87970\u0022\u003EProstate Adenocarcinoma Grade Group 1: Rationale for Retaining a Cancer Label in the 2022 World Health Organization Classification.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E83\u003C\/i\u003E(4), 301-303.","year":2023,"type":"Journal Article (Review)"},{"title":"Li, Z., Huang, Y., Patil, D., Rubin, M. A., \u0026 Sanda, M. G. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/116843\u0022\u003ECovariate-specific evaluation of continuous biomarker\u003C\/a\u003E. \u003Ci\u003EStatistics in Medicine\u003C\/i\u003E, \u003Ci\u003E42\u003C\/i\u003E(7), 953-969.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Schnidrig, D., Garofoli, A., Benjak, A., R\u00e4tsch, G., Rubin, M. A., Piscuoglio, S., \u0026 Ng, K. Y. C. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/121692\u0022\u003EPipeIT2: A tumor-only somatic variant calling workflow for molecular diagnostic ion torrent sequencing data\u003C\/a\u003E. \u003Ci\u003EGenomics\u003C\/i\u003E, \u003Ci\u003E115\u003C\/i\u003E(2), 110587.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Gillessen, S., Bossi, A., Davis, I. D., de Bono, J., Fizazi, K., James, N. D., Mottet, N., Shore, N., Small, E., Smith, M., Sweeney, C., Tombal, B., Antonarakis, E. S., Aparicio, A. M., Armstrong, A. J., Attard, G., Beer, T. M., Beltran, H., Bjartell, A., \u2026 Omlin, A. (2023). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/172880\u0022\u003EManagement of Patients with Advanced Prostate Cancer. Part I: Intermediate-\/High-risk and Locally Advanced Disease, Biochemical Relapse, and Side Effects of Hormonal Treatment: Report of the Advanced Prostate Cancer Consensus Conference 2022.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E83\u003C\/i\u003E(3), 267-293.","year":2023,"type":"Journal Article (Review)"},{"title":"Menon, S., Moch, H., Berney, D. M., Cree, I. A., Srigley, J. R., Tsuzuki, T., Comp\u00e9rat, E., Hartmann, A., Netto, G., Rubin, M. A., Gill, A. J., Turajlic, S., Tan, P. H., Raspollini, M. R., Tickoo, S. K., \u0026 Amin, M. B. (2023). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/88052\u0022\u003EThe WHO 2022 classification of penile and scrotal cancers: updates and evolution.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EHistopathology\u003C\/i\u003E, \u003Ci\u003E82\u003C\/i\u003E(4), 508-520.","year":2023,"type":"Journal Article (Review)"},{"title":"Vasciaveo, A., Arriaga, J. M., Nunes de Almeida, F., Zou, M., Douglass, E. F., Picech, F., Shibata, M., Rodr\u00edguez Calero, J. A., De Brot, S. D., Mitrofanova, A., Chua, C. W., Karan, C., Realubit, R., Pampou, S., Kim, J. Y., Afari, S. N., Mukhammadov, T., Zanella, L., Corey, E., \u2026 Abate-Shen, C. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/88862\u0022\u003EOncoLoop: A network-based precision cancer medicine framework\u003C\/a\u003E. \u003Ci\u003ECancer Discovery\u003C\/i\u003E, \u003Ci\u003E13\u003C\/i\u003E(2), 386-409.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Triscott, J. C. C., Reist, M., K\u00fcng, L., Moselle, F. C., Lehner, M., Gallon, J., Ravi, A., Arora, G. K., De Brot, S. D., Lundquist, M., Gallart-Ayala, H., Ivanisevic, J., Piscuoglio, S., Cantley, L. C., Emerling, B. M., \u0026 Rubin, M. A. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/121235\u0022\u003EPI5P4K\u03b1 supports prostate cancer metabolism and exposes a survival vulnerability during androgen receptor inhibition\u003C\/a\u003E. \u003Ci\u003EScience Advances\u003C\/i\u003E, \u003Ci\u003E9\u003C\/i\u003E(5), eade8641.","year":2023,"type":"Journal Article (Original Article)"},{"title":"Rheinbay, E., Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G., Hornsh\u00f8j, H., Hess, J. M., Juul, R. I., Lin, Z., Feuerbach, L., Sabarinathan, R., Madsen, T., Kim, J., Mularoni, L., Shuai, S., Lanzos Camaioni, A. A., Herrmann, C., Maruvka, Y. E., \u2026 Getz, G. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/120936\u0022\u003EAuthor Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes\u003C\/a\u003E. \u003Ci\u003ENature\u003C\/i\u003E, \u003Ci\u003E614\u003C\/i\u003E(7948), E40.","year":2023,"type":"Journal Article (Further Contribution)"},{"title":"Casolino, R., Johns, A. L., Courtot, M., Lawlor, R. T., De Lorenzo, F., Horgan, D., Mateo, J., Normanno, N., Rubin, M. A., Stein, L., Subbiah, V., Westphalen, B. C., Lawler, M., Park, K., Perdomo, S., Yoshino, T., Wu, J., \u0026 Biankin, A. V. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/121247\u0022\u003EAccelerating cancer omics and precision oncology in health care and research: a Lancet Oncology Commission\u003C\/a\u003E. \u003Ci\u003EThe Lancet Oncology\u003C\/i\u003E, \u003Ci\u003E24\u003C\/i\u003E(2), 123-125.","year":2023,"type":"Journal Article (Further Contribution)"},{"title":"Rubin, M. A., Amin, M. B., Comp\u00e9rat, E., Gill, A., Hartman, A., Menon, S., Raspollini, M., Srigley, J., Tan, P. H., Ticktoo, S., Tsuzuki, T., Turajlic, S., Cree, I., Berney, D., Moch, H., \u0026 Netto, G. J. (2023). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/87969\u0022\u003EReply to Yongbao Wei, Haijian Huang, and Liefu Ye\u2019s Letter to the Editor re: George J. Netto, Mahul B. Amin, Daniel M. Berney, et al. The 2022 World Health Organization Classification of Tumors of the Urinary System and Male Genital Organs-Part B: Prostate and Urinary Tract Tumors. Eur Urol. In press. https:\/\/doi.org\/10.1016\/j.eururo.2022.07.002\u003C\/a\u003E. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E83\u003C\/i\u003E(1), e16-e17.","year":2023,"type":"Journal Article (Further Contribution)"},{"title":"Cyrta, J., Rosiene, J., Bareja, R., Kudman, S., Al Zoughbi, W., Motanagh, S., Wilkes, D. C., Eng, K., Zhang, T., Sticca, E., Mathew, S., Rubin, M. A., Imielinksi, M., \u0026 Mosquera, J. M. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/166707\u0022\u003EWhole-genome characterization of myoepithelial carcinomas of the soft tissue\u003C\/a\u003E. \u003Ci\u003ECold Spring Harbor Molecular Case Studies\u003C\/i\u003E, \u003Ci\u003E8\u003C\/i\u003E(7).","year":2022,"type":"Journal Article (Original Article)"},{"title":"Akhoundova Sanoyan, D., Feng, F. Y., Pritchard, C. C., \u0026 Rubin, M. A. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/88735\u0022\u003EMolecular Genetics of Prostate Cancer and Role of Genomic Testing.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003ESurgical Pathology Clinics\u003C\/i\u003E, \u003Ci\u003E15\u003C\/i\u003E(4), 617-628.","year":2022,"type":"Journal Article (Review)"},{"title":"Zeng, Q., Saghafinia, S., Chryplewicz, A., Fournier, N., Christe, L. C., Xie, Y.-Q., Guillot, J., Yucel, S., Li, P., Galv\u00e1n Hern\u00e1ndez, J. A., Karamitopoulou Diamantis, E., Zlobec, I., Ataca, D., Gallean, F., Zhang, P., Rodr\u00edguez Calero, J. A., Rubin, M. A., Tichet, M., Homicsko, K., \u0026 Hanahan, D. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/88962\u0022\u003EAberrant hyperexpression of the RNA binding protein FMRP in tumors mediates immune evasion\u003C\/a\u003E. \u003Ci\u003EScience\u003C\/i\u003E, \u003Ci\u003E378\u003C\/i\u003E(6621), eabl7207.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Netto, G. J., Amin, M. B., Berney, D. M., Comp\u00e9rat, E. M., Gill, A. J., Hartmann, A., Menon, S., Raspollini, M. R., Rubin, M. A., Srigley, J. R., Hoon Tan, P., Tickoo, S. K., Tsuzuki, T., Turajlic, S., Cree, I., \u0026 Moch, H. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/86753\u0022\u003EThe 2022 World Health Organization Classification of Tumors of the Urinary System and Male Genital Organs-Part B: Prostate and Urinary Tract Tumors.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E82\u003C\/i\u003E(5), 469-482.","year":2022,"type":"Journal Article (Review)"},{"title":"Moch, H., Amin, M. B., Berney, D. M., Comp\u00e9rat, E. M., Gill, A. J., Hartmann, A., Menon, S., Raspollini, M. R., Rubin, M. A., Srigley, J. R., Hoon Tan, P., Tickoo, S. K., Tsuzuki, T., Turajlic, S., Cree, I., \u0026 Netto, G. J. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/86290\u0022\u003EThe 2022 World Health Organization Classification of Tumours of the Urinary System and Male Genital Organs-Part A: Renal, Penile, and Testicular Tumours.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E82\u003C\/i\u003E(5), 458-468.","year":2022,"type":"Journal Article (Review)"},{"title":"Ferguson, A. M., \u0026 Rubin, M. A. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/87320\u0022\u003ELineage plasticity in prostate cancer: Looking beyond intrinsic alterations\u003C\/a\u003E. \u003Ci\u003ECancer Letters\u003C\/i\u003E, \u003Ci\u003E548\u003C\/i\u003E(215901), 215901.","year":2022,"type":"Journal Article (Further Contribution)"},{"title":"Comp\u00e9rat, E., Amin, M. B., Berney, D. M., Cree, I., Menon, S., Moch, H., Netto, G. J., Rao, V., Raspollini, M. R., Rubin, M. A., Srigley, J. R., Tan, P. H., Tickoo, S. K., Turajlic, S., \u0026 Tsuzuki, T. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/116114\u0022\u003EWhat\u2019s new in WHO fifth edition\u2009-\u2009urinary tract.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EHistopathology\u003C\/i\u003E, \u003Ci\u003E81\u003C\/i\u003E(4), 439-446.","year":2022,"type":"Journal Article (Review)"},{"title":"Berney, D. M., Cree, I., Rao, V., Moch, H., Srigley, J. R., Tsuzuki, T., Amin, M. B., Comperat, E. M., Hartmann, A., Menon, S., Netto, G. J., Rubin, M. A., Turajlic, S., Raspollini, M. R., \u0026 Tickoo, S. K. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/70536\u0022\u003EAn Introduction to the WHO 5th Edition 2022 Classification of Testicular tumours.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EHistopathology\u003C\/i\u003E, \u003Ci\u003E81\u003C\/i\u003E(4), 459-466.","year":2022,"type":"Journal Article (Review)"},{"title":"Lobo, J., Ohashi, R., Amin, M. B., Berney, D. M., Comp\u00e9rat, E. M., Cree, I. A., Gill, A. J., Hartmann, A., Menon, S., Netto, G. J., Raspollini, M. R., Rubin, M. A., Tan, P. H., Tickoo, S. K., Tsuzuki, T., Turajlic, S., Zhou, M., Srigley, J. R., \u0026 Moch, H. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/85207\u0022\u003EThe WHO 2022 landscape of papillary and chromophobe renal cell carcinoma.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EHistopathology\u003C\/i\u003E, \u003Ci\u003E81\u003C\/i\u003E(4), 426-438.","year":2022,"type":"Journal Article (Review)"},{"title":"Kench, J. G., Amin, M. B., Berney, D. M., Comp\u00e9rat, E. M., Cree, I. A., Gill, A. J., Hartmann, A., Menon, S., Moch, H., Netto, G. J., Raspollini, M. R., Rubin, M. A., Tan, P. H., Tsuzuki, T., Turjalic, S., van der Kwast, T. H., Zhou, M., \u0026 Srigley, J. R. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/85878\u0022\u003EWHO Classification of Tumours 5th Edition: Evolving Issues in Classification, Diagnosis and Prognostication of Prostate Cancer.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EHistopathology\u003C\/i\u003E, \u003Ci\u003E81\u003C\/i\u003E(4), 447-458.","year":2022,"type":"Journal Article (Review)"},{"title":"Janowczyk, A., Baumhoer, D., Dirnhofer, S., Grobholz, R., Kipar, A., de Leval, L., Merkler, D., Michielin, O., Moch, H., Perren, A., Rottenberg, S., Rubbia-Brandt, L., Rubin, M. A., Sempoux, C., Tolnay, M., Zlobec, I., \u0026 Koelzer, V. H. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/85308\u0022\u003ETowards a national strategy for digital pathology in Switzerland\u003C\/a\u003E. \u003Ci\u003EVirchows Archiv\u003C\/i\u003E, \u003Ci\u003E481\u003C\/i\u003E(4), 647-652.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Akhoundova Sanoyan, D., \u0026 Rubin, M. A. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/87209\u0022\u003EClinical application of advanced multi-omics tumor profiling: Shaping precision oncology of the future.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003ECancer Cell\u003C\/i\u003E, \u003Ci\u003E40\u003C\/i\u003E(9), 920-938.","year":2022,"type":"Journal Article (Review)"},{"title":"Cotter, K. A., \u0026 Rubin, M. A. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/85462\u0022\u003EThe evolving landscape of prostate cancer somatic mutations.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EThe Prostate\u003C\/i\u003E, \u003Ci\u003E82 Suppl 1\u003C\/i\u003E(Suppl 1), S13-S24.","year":2022,"type":"Journal Article (Review)"},{"title":"Turco, F., Armstrong, A., Attard, G., Beer, T. M., Beltran, H., Bjartell, A., Bossi, A., Briganti, A., Bristow, R. G., Bulbul, M., Caffo, O., Chi, K. N., Clarke, C., Clarke, N., Davis, I. D., de Bono, J., Duran, I., Eeles, R., Efstathiou, E., \u2026 Omlin, A. G. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/70286\u0022\u003ECorrigendum to \u0022What Experts Think About Prostate Cancer Management During the COVID-19 Pandemic: Report from the Advanced Prostate Cancer Consensus Conference 2021\u0022 [Eur Urol 2022]\u003C\/a\u003E. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E82\u003C\/i\u003E(1), e18-e19.","year":2022,"type":"Journal Article (Further Contribution)"},{"title":"Cyrta, J., Prandi, D., Arora, A., Hovelson, D. H., Sboner, A., Rodr\u00edguez Calero, J. A., Fedrizzi, T., Beltran, H., Robinson, D. R., Gopalan, A., True, L., Nelson, P. S., Robinson, B. D., Mosquera, J. M., Tomlins, S. A., Shen, R., Demichelis, F., \u0026 Rubin, M. A. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/67949\u0022\u003EComparative genomics of primary prostate cancer and paired metastases: insights from 12 molecular case studies\u003C\/a\u003E. \u003Ci\u003EThe Journal of Pathology\u003C\/i\u003E, \u003Ci\u003E257\u003C\/i\u003E(3), 274-284.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Turco, F., Armstrong, A., Attard, G., Beer, T. M., Beltran, H., Bjartell, A., Bossi, A., Briganti, A., Bristow, R. G., Bulbul, M., Caffo, O., Chi, K. N., Clarke, C. S., Clarke, N., Davis, I. D., de Bono, J., Duran, I., Eeles, R., Efstathiou, E., \u2026 Omlin, A. G. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/70089\u0022\u003EWhat Experts Think About Prostate Cancer Management During the COVID-19 Pandemic: Report from the Advanced Prostate Cancer Consensus Conference 2021\u003C\/a\u003E. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E82\u003C\/i\u003E(1), 6-11.","year":2022,"type":"Journal Article (Further Contribution)"},{"title":"Raman, R., Villefranc, J. A., Ullmann, T. M., Thiesmeyer, J., Anelli, V., Yao, J., Hurley, J. R., Pauli, C., Bareja, R., Wha Eng, K., Dorsaint, P., Wilkes, D. C., Beg, S., Kudman, S., Shaw, R., Churchill, M., Ahmed, A., Keefer, L., Misner, I., \u2026 Houvras, Y. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/70583\u0022\u003EInhibition of FGF receptor blocks adaptive resistance to RET inhibition in CCDC6-RET-rearranged thyroid cancer\u003C\/a\u003E. \u003Ci\u003EJournal of Experimental Medicine\u003C\/i\u003E, \u003Ci\u003E219\u003C\/i\u003E(6).","year":2022,"type":"Journal Article (Original Article)"},{"title":"Orlando, F., Romanel, A., Trujillo, B., Sigouros, M., Wetterskog, D., Quaini, O., Leone, G., Xiang, J. Z., Wingate, A., Tagawa, S., Jayaram, A., Linch, M., Jamal-Hanjani, M., Swanton, C., Rubin, M. A., Wyatt, A. W., Beltran, H., Attard, G., \u0026 Demichelis, F. 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(2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/70590\u0022\u003EAlterations in homologous recombination repair genes in prostate cancer brain metastases\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E13\u003C\/i\u003E(1), 2400.","year":2022,"type":"Journal Article (Original Article)"},{"title":"De Brot, S. D., Lothion-Roy, J., Grau Roma, L., White, E., Guscetti, F., Rubin, M. A., \u0026 Mongan, N. P. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59238\u0022\u003EHistological and immunohistochemical investigation of canine prostate carcinoma with identification of common intraductal carcinoma component\u003C\/a\u003E. \u003Ci\u003EVeterinary and Comparative Oncology\u003C\/i\u003E, \u003Ci\u003E20\u003C\/i\u003E(1), 38-49.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Fontugne, J., Cai, P. Y., Alnajar, H., Bhinder, B., Park, K., Ye, H., Beg, S., Sailer, V., Siddiqui, J., Blattner-Johnson, M., Croyle, J. A., Noorzad, Z., Calagua, C., MacDonald, T. Y., Axcrona, U., Bogaard, M., Axcrona, K., Scherr, D. S., Sanda, M. G., \u2026 Mosquera, J. M. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/115970\u0022\u003ECollision tumors revealed by prospectively assessing subtype-defining molecular alterations in 904 individual prostate cancer foci\u003C\/a\u003E. \u003Ci\u003EJCI Insight\u003C\/i\u003E, \u003Ci\u003E7\u003C\/i\u003E(4).","year":2022,"type":"Journal Article (Original Article)"},{"title":"Pauli, C., De Boni, L., Pauwels, J. E., Chen, Y., Planas-Paz, L., Shaw, R., Emerling, B. M., Grandori, C., Hopkins, B. D., \u0026 Rubin, M. A. (2022). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59249\u0022\u003EA Functional Precision Oncology Approach to Identify Treatment Strategies for Myxofibrosarcoma Patients\u003C\/a\u003E. \u003Ci\u003EMolecular Cancer Research\u003C\/i\u003E, \u003Ci\u003E20\u003C\/i\u003E(2), 244-252.","year":2022,"type":"Journal Article (Original Article)"},{"title":"Ryman-Tubb, T., Lothion-Roy, J. H., Metzler, V. M., Harris, A. E., Robinson, B. D., Rizvanov, A. A., Jeyapalan, J. N., James, V. H., England, G., Rutland, C. S., Persson, J. L., Kenner, L., Rubin, M. A., Mongan, N. P., \u0026 De Brot, S. D. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59247\u0022\u003EComparative pathology of dog and human prostate cancer.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EVeterinary Medicine and Science\u003C\/i\u003E, \u003Ci\u003E8\u003C\/i\u003E(1), 110-120.","year":2022,"type":"Journal Article (Review)"},{"title":"Vogl, U. M., Beer, T. M., Davis, I. D., Shore, N. D., Sweeney, C. J., Ost, P., Attard, G., Bossi, A., de Bono, J., Drake, C. G., Efstathiou, E., Fanti, S., Fizazi, K., Halabi, S., James, N., Mottet, N., Padhani, A. R., Roach, M., Rubin, M. A., \u2026 Gillessen, S. (2022). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59252\u0022\u003ELack of consensus identifies important areas for future clinical research: Advanced Prostate Cancer Consensus Conference (APCCC) 2019 findings\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EEuropean Journal of Cancer\u003C\/i\u003E, \u003Ci\u003E160\u003C\/i\u003E, 24-60.","year":2022,"type":"Journal Article (Review)"},{"title":"Bolis, M., Bossi, D., Vallerga, A., Ceserani, V., Cavalli, M., Impellizzieri, D., Di Rito, L., Zoni, E., Mosole, S., Elia, A. R., Rinaldi, A., Pereira Mestre, R., D\u2019Antonio, E., Ferrari, M., Stoffel, F., Jermini, F., Gillessen, S., Bubendorf, L., Schraml, P., \u2026 Theurillat, J.-P. P. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/58164\u0022\u003EDynamic prostate cancer transcriptome analysis delineates the trajectory to disease progression\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E12\u003C\/i\u003E(1), 7033.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Mukhopadhyay, C., Yang, C., Xu, L., Liu, D., Wang, Y., Huang, D., Deonarine, L. D., Cyrta, J., Davicioni, E., Sboner, A., Robinson, B. D., Chinnaiyan, A. M., Rubin, M. A., Barbieri, C. E., \u0026 Zhou, P. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59248\u0022\u003EG3BP1 inhibits Cul3SPOP to amplify AR signaling and promote prostate cancer\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E12\u003C\/i\u003E(1), 6662.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Papachristodoulou, A., Rodr\u00edguez Calero, J. A., Panja, S., Margolskee, E., Virk, R. K., Milner, T. A., Martina, L. P., Kim, J. Y., Di Bernardo, M., Williams, A. B., Maliza, E. A., Caputo, J. M., Haas, C., Wang, V., De Castro, G. J., Wenske, S., Hibshoosh, H., McKiernan, J. M., Shen, M. M., \u2026 Abate-Shen, C. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59246\u0022\u003ENKX3.1 Localization to Mitochondria Suppresses Prostate Cancer Initiation\u003C\/a\u003E. \u003Ci\u003ECancer Discovery\u003C\/i\u003E, \u003Ci\u003E11\u003C\/i\u003E(9), 2316-2333.","year":2021,"type":"Journal Article (Original Article)"},{"title":"El Tekle, G., Bernasocchi, T., Unni, A. M., Bertoni, F., Rossi, D., Rubin, M. A., \u0026 Theurillat, J.-P. (2021). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59245\u0022\u003ECo-occurrence and mutual exclusivity: what cross-cancer mutation patterns can tell us.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003ETrends in Cancer\u003C\/i\u003E, \u003Ci\u003E7\u003C\/i\u003E(9), 823-836.","year":2021,"type":"Journal Article (Review)"},{"title":"Armstrong, A. J., Li, X., Tucker, M., Li, S., Mu, X. J., Eng, K. W., Sboner, A., Rubin, M. A., \u0026 Gerstein, M. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59237\u0022\u003EMolecular medicine tumor board: whole-genome sequencing to inform on personalized medicine for a man with advanced prostate cancer\u003C\/a\u003E. \u003Ci\u003EProstate Cancer and Prostatic Diseases\u003C\/i\u003E, \u003Ci\u003E24\u003C\/i\u003E(3), 786-793.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Servant, R., Garioni, M., Vlajnic, T., Blind, M., Pueschel, H., M\u00fcller, D. C., Zellweger, T., Templeton, A. J., Garofoli, A., Maletti, S. L., Piscuoglio, S., Rubin, M. A., Seifert, H., Rentsch, C. A., Bubendorf, L., \u0026 Le Magnen, C. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59244\u0022\u003EProstate cancer patient-derived organoids: detailed outcome from a prospective cohort of 81 clinical specimens\u003C\/a\u003E. \u003Ci\u003EThe Journal of Pathology\u003C\/i\u003E, \u003Ci\u003E254\u003C\/i\u003E(5), 543-555.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Cotter, K. A., Gallon, J., Uebersax, N., Rubin, P. D., Meyer, K. D., Piscuoglio, S., Jaffrey, S. R., \u0026 Rubin, M. A. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59243\u0022\u003EMapping of m6A and Its Regulatory Targets in Prostate Cancer Reveals a METTL3-Low Induction of Therapy Resistance\u003C\/a\u003E. \u003Ci\u003EMolecular Cancer Research\u003C\/i\u003E, \u003Ci\u003E19\u003C\/i\u003E(8), 1398-1411.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Ravi, A., Palamiuc, L., Loughran, R. M., Triscott, J. C. C., Arora, G. K., Kumar, A., Tieu, V., Pauli, C., Reist, M., Lew, R. J., Houlihan, S. L., Fellmann, C., Metallo, C., Rubin, M. A., \u0026 Emerling, B. M. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59241\u0022\u003EPI5P4Ks drive metabolic homeostasis through peroxisome-mitochondria interplay\u003C\/a\u003E. \u003Ci\u003EDevelopmental Cell\u003C\/i\u003E, \u003Ci\u003E56\u003C\/i\u003E(11), 1661-1676e10.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Sugita, M., Wilkes, D. C., Bareja, R., Eng, K. W., Nataraj, S., Jimenez-Flores, R. A., Yan, L., De Leon, J. P., Croyle, J. A., Kaner, J., Merugu, S., Sharma, S., MacDonald, T. Y., Noorzad, Z., Panchal, P., Pancirer, D., Cheng, S., Xiang, J. Z., Olson, L., \u2026 Guzman, M. L. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59240\u0022\u003ETargeting the epichaperome as an effective precision medicine approach in a novel PML-SYK fusion acute myeloid leukemia\u003C\/a\u003E. \u003Ci\u003ENPJ Precision Oncology\u003C\/i\u003E, \u003Ci\u003E5\u003C\/i\u003E(1), 44.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Hommerding, O., Allory, Y., Argani, P., Bismar, T. A., Bubendorf, L., Canete-Portillo, S., Chaux, A., Chen, Y.-B., Cheng, L., Cubilla, A. L., Egevad, L., Gill, A. J., Grignon, D. J., Hartmann, A., Hes, O., Idrees, M. T., Kao, C.-S., Knowles, M. A., Looijenga, L. H. J., \u2026 Kristiansen, G. (2021). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59219\u0022\u003E[Molecular pathology of urogenital tumors : Recommendations from the 2019 International Society of Urological Pathology (ISUP) Consensus Conference].\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EDer Pathologe\u003C\/i\u003E, \u003Ci\u003E42\u003C\/i\u003E(3), 310-318.","year":2021,"type":"Journal Article (Review)"},{"title":"Fine, S. W., Trpkov, K., Amin, M. B., Algaba, F., Aron, M., Baydar, D. E., Beltran, A. L., Brimo, F., Cheville, J. C., Colecchia, M., Comperat, E., Costello, T., da Cunha, I. W., Delprado, W., DeMarzo, A. M., Giannico, G. A., Gordetsky, J. B., Guo, C. C., Hansel, D. E., \u2026 Epstein, J. I. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45298\u0022\u003EPractice patterns related to prostate cancer grading: results of a 2019 Genitourinary Pathology Society clinician survey\u003C\/a\u003E. \u003Ci\u003EUrologic Oncology\u003C\/i\u003E, \u003Ci\u003E39\u003C\/i\u003E(5), 295e1-295e8.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Epstein, J. I., Amin, M. B., Fine, S. W., Algaba, F., Aron, M., Baydar, D. E., Beltran, A. L., Brimo, F., Cheville, J. C., Colecchia, M., Comperat, E., da Cunha, I. W., Delprado, W., DeMarzo, A. M., Giannico, G. A., Gordetsky, J. B., Guo, C. C., Hansel, D. E., Hirsch, M. S., \u2026 Trpkov, K. (2021). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45297\u0022\u003EThe 2019 Genitourinary Pathology Society (GUPS) White Paper on Contemporary Grading of Prostate Cancer.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EArchives of Pathology \u0026 Laboratory Medicine\u003C\/i\u003E, \u003Ci\u003E145\u003C\/i\u003E(4), 461-493.","year":2021,"type":"Journal Article (Review)"},{"title":"Bolis, M., Bossi, D., Vallerga, A., Cavalli, M., di Rito, L., Zoni, E., Mosole, S., Rinaldi, A., Pereira Mestre, R., D\u2019Antonio, E., Ferrari, M., Stoffel, F., Jermini, F., Gillessen Sommer, S., Bubendorf, L., Schraml, P., Moch, H., Spahn, M., Thalmann, G., \u2026 Theurillat, J.-P. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59251\u0022\u003EDynamic prostate cancer transcriptome analysis delineates the trajectory to disease progression\u003C\/a\u003E. In \u003Ci\u003EResearch Square\u003C\/i\u003E. Research Square.","year":2021,"type":"Working Paper"},{"title":"Karkampouna, S., La Manna, F., Benjak, A., Kiener, M. S., De Menna, M., Zoni, E., Grosjean, J., Klima, I., Garofoli, A., Bolis, M., Vallerga, A., Theurillat, J.-P., De Filippo, M. R., Genitsch Gratwohl, V., Keller, D., Booij, T. H., Stirnimann, C. U., Eng, K., Sboner, A., \u2026 Kruithof-de Julio, M. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45810\u0022\u003EPatient-derived xenografts and organoids model therapy response in prostate cancer\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E12\u003C\/i\u003E(1), 1117.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Bernasocchi, T., El Tekle, G., Bolis, M., Mutti, A., Vallerga, A., Brandt, L. P., Spriano, F., Svinkina, T., Zoma, M., Ceserani, V., Rinaldi, A., Janouskova, H., Bossi, D., Cavalli, M., Mosole, S., Geiger, R., Dong, Z., Yang, C.-G., Albino, D., \u2026 Theurillat, J.-P. P. (2021). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45809\u0022\u003EDual functions of SPOP and ERG dictate androgen therapy responses in prostate cancer\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E12\u003C\/i\u003E(1), 734.","year":2021,"type":"Journal Article (Original Article)"},{"title":"Formaggio, N., Rubin, M. A., \u0026 Theurillat, J.-P. (2021). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/59250\u0022\u003ELoss and revival of androgen receptor signaling in advanced prostate cancer.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EOncogene\u003C\/i\u003E, \u003Ci\u003E40\u003C\/i\u003E(7), 1205-1216.","year":2021,"type":"Journal Article (Review)"},{"title":"Rubin, M. A., Bristow, R. G., Thienger, P. D., Dive, C., \u0026 Imielinski, M. (2020). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45304\u0022\u003EImpact of Lineage Plasticity to and from a Neuroendocrine Phenotype on Progression and Response in Prostate and Lung Cancers.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EMolecular Cell\u003C\/i\u003E, \u003Ci\u003E80\u003C\/i\u003E(4), 562-577.","year":2020,"type":"Journal Article (Review)"},{"title":"Cyrta, J., Augspach, A. K., De Filippo, M. R., Prandi, D., Thienger, P. D., Benelli, M., Cooley, V., Bareja, R., Wilkes, D., Chae, S.-S., Cavaliere, P., Dephoure, N., Uldry, A.-C., Braga, S. M.-P., Roma, L., Cohen, S., Jaquet, M., Brandt, L. P., Alshalalfa, M., \u2026 Rubin, M. A. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45113\u0022\u003ERole of specialized composition of SWI\/SNF complexes in prostate cancer lineage plasticity\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E11\u003C\/i\u003E(1), 5549.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Thienger, P. D., \u0026 Rubin, M. A. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45303\u0022\u003ESETting Up for Epigenetic Regulation of Advanced Prostate Cancer\u003C\/a\u003E. \u003Ci\u003ECancer Cell\u003C\/i\u003E, \u003Ci\u003E38\u003C\/i\u003E(3), 309-311.","year":2020,"type":"Journal Article (Further Contribution)"},{"title":"Lotan, T. L., Tomlins, S. A., Bismar, T. A., Van der Kwast, T. H., Grignon, D., Egevad, L., Kristiansen, G., Pritchard, C. C., Rubin, M. A., \u0026 Bubendorf, L. (2020). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45296\u0022\u003EReport From the International Society of Urological Pathology (ISUP) Consultation Conference on Molecular Pathology of Urogenital Cancers. I. Molecular Biomarkers in Prostate Cancer.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EThe American Journal of Surgical Pathology\u003C\/i\u003E, \u003Ci\u003E44\u003C\/i\u003E(7), e15-e29.","year":2020,"type":"Journal Article (Review)"},{"title":"Auguste, A., Blanc-Durand, F., Deloger, M., Le Formal, A., Bareja, R., Wilkes, D. C., Richon, C., Brunn, B., Caron, O., Devouassoux-Shisheboran, M., Gouy, S., Morice, P., Bentivegna, E., Sboner, A., Elemento, O., Rubin, M. A., Pautier, P., Genestie, C., Cyrta, J., \u0026 Leary, A. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45301\u0022\u003ESmall Cell Carcinoma of the Ovary, Hypercalcemic Type (SCCOHT) beyond SMARCA4 Mutations: A Comprehensive Genomic Analysis\u003C\/a\u003E. \u003Ci\u003ECells\u003C\/i\u003E, \u003Ci\u003E9\u003C\/i\u003E(6).","year":2020,"type":"Journal Article (Original Article)"},{"title":"Pisapia, D. J., Ohara, K., Bareja, R., Wilkes, D. C., Hissong, E., Croyle, J. A., Kim, J.-H., Saab, J., MacDonald, T. Y., Beg, S., O\u2019Reilly, C., Kudman, S., Rubin, M. A., Elemento, O., Sboner, A., Greenfield, J., \u0026 Mosquera, J. M. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45300\u0022\u003EFusions involving BCOR and CREBBP are rare events in infiltrating glioma\u003C\/a\u003E. \u003Ci\u003EActa Neuropathologica Communications\u003C\/i\u003E, \u003Ci\u003E8\u003C\/i\u003E(1), 80.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Rubin, M. A., Largiad\u00e8r, C. R., \u0026 Staub, T. P. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/39532\u0022\u003EDas Bern Center for Precision Medicine (BCPM)\u003C\/a\u003E. \u003Ci\u003ESchweizerisches Krebsbulletin\u003C\/i\u003E, \u003Ci\u003E01\/20\u003C\/i\u003E, 48-50.","year":2020,"type":"Journal Article (Further Contribution)"},{"title":"Reyna, M. A., Haan, D., Paczkowska, M., Verbeke, L. P. C., Vazquez, M., Kahraman, A., Pulido-Tamayo, S., Barenboim, J., Wadi, L., Dhingra, P., Shrestha, R., Getz, G., Lawrence, M. S., Pedersen, J. S., Rubin, M. A., Wheeler, D. A., Brunak, S., Izarzugaza, J. M. G., Khurana, E., \u2026 Raphael, B. J. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/44975\u0022\u003EPathway and network analysis of more than 2500 whole cancer genomes\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E11\u003C\/i\u003E(1), 729.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Rheinbay, E., Nielsen, M. M., Abascal, F., Wala, J. A., Shapira, O., Tiao, G., Hornsh\u00f8j, H., Hess, J. M., Juul, R. I., Lin, Z., Feuerbach, L., Sabarinathan, R., Madsen, T., Kim, J., Mularoni, L., Shuai, S., Lanzos Camaioni, A. A., Herrmann, C., Maruvka, Y. E., \u2026 Getz, G. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/54868\u0022\u003EAnalyses of non-coding somatic drivers in 2,658\u00a0cancer whole genomes\u003C\/a\u003E. \u003Ci\u003ENature\u003C\/i\u003E, \u003Ci\u003E578\u003C\/i\u003E(7793), 102-111.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Arriaga, J. M., Panja, S., Alshalalfa, M., Zhao, J., Zou, M., Giacobbe, A., Madubata, C. J., Kim, J. Y., Rodr\u00edguez Calero, J. A., Coleman, I., Virk, R. K., Hibshoosh, H., Ertunc, O., Ozbek, B., Fountain, J., Jeffrey Karnes, R., Luo, J., Antonarakis, E. S., Nelson, P. S., \u2026 Abate-Shen, C. (2020). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/45302\u0022\u003EA MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance\u003C\/a\u003E. \u003Ci\u003ENature Ancer\u003C\/i\u003E, \u003Ci\u003E1\u003C\/i\u003E(11), 1082-1096.","year":2020,"type":"Journal Article (Original Article)"},{"title":"Beltran, H., Hruszkewycz, A., Scher, H. I., Hildesheim, J., Isaacs, J., Yu, E. Y., Kelly, K., Lin, D., Dicker, A., Arnold, J., Hecht, T., Wicha, M., Sears, R., Rowley, D., White, R., Gulley, J. L., Lee, J., Diaz Meco, M., Small, E. J., \u2026 Nelson, P. S. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/185585\u0022\u003EThe Role of Lineage Plasticity in Prostate Cancer Therapy Resistance\u003C\/a\u003E. \u003Ci\u003EClinical Cancer Research\u003C\/i\u003E, \u003Ci\u003E25\u003C\/i\u003E(23), 6916-6924.","year":2019,"type":"Journal Article (Further Contribution)"},{"title":"Persi, E., Prandi, D., Wolf, Y. I., Pozniak, Y., Barnabas, G. D., Levanon, K., Barshack, I., Barbieri, C., Gasperini, P., Beltran, H., Faltas, B. M., Rubin, M. A., Geiger, T., Koonin, E. V., Demichelis, F., \u0026 Horn, D. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184145\u0022\u003EProteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues\u003C\/a\u003E. \u003Ci\u003EProceedings of the National Academy of Sciences of the United States of America - PNAS\u003C\/i\u003E, \u003Ci\u003E116\u003C\/i\u003E(34), 16987-16996.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Lou, S., Cotter, K. A., Li, T., Liang, J., Mohsen, H., Liu, J., Zhang, J., Cohen, S., Xu, J., Yu, H., Rubin, M. A., \u0026 Gerstein, M. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184147\u0022\u003EGRAM: A GeneRAlized Model to predict the molecular effect of a non-coding variant in a cell-type specific manner\u003C\/a\u003E. \u003Ci\u003EPLoS Genetics\u003C\/i\u003E, \u003Ci\u003E15\u003C\/i\u003E(8), e1007860.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Robinson, B. D., Vlachostergios, P. J., Bhinder, B., Liu, W., Li, K., Moss, T. J., Bareja, R., Park, K., Tavassoli, P., Cyrta, J., Tagawa, S. T., Nanus, D. M., Beltran, H., Molina, A. M., Khani, F., Miguel Mosquera, J., Xylinas, E., Shariat, S. F., Scherr, D. S., \u2026 Faltas, B. M. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/185587\u0022\u003EUpper tract urothelial carcinoma has a luminal-papillary T-cell depleted contexture and activated FGFR3 signaling\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E10\u003C\/i\u003E(1), 2977.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Shen, M. M., \u0026 Rubin, M. A. (2019). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184143\u0022\u003EProstate Cancer Research at the Crossroads.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003ECold Spring Harbor Perspectives in Medicine\u003C\/i\u003E, \u003Ci\u003E9\u003C\/i\u003E(7).","year":2019,"type":"Journal Article (Review)"},{"title":"Abida, W., Cyrta, J., Heller, G., Prandi, D., Armenia, J., Coleman, I., Cieslik, M., Benelli, M., Robinson, D., Van Allen, E. M., Sboner, A., Fedrizzi, T., Mosquera, J. M., Robinson, B. D., De Sarkar, N., Kunju, L. P., Tomlins, S., Wu, Y. M., Nava Rodrigues, D., \u2026 Sawyers, C. L. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184142\u0022\u003EGenomic correlates of clinical outcome in advanced prostate cancer\u003C\/a\u003E. \u003Ci\u003EProceedings of the National Academy of Sciences of the United States of America - PNAS\u003C\/i\u003E, \u003Ci\u003E116\u003C\/i\u003E(23), 11428-11436.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Augello, M. A., Liu, D., Deonarine, L. D., Robinson, B. D., Huang, D., Stelloo, S., Blattner, M., Doane, A. S., Wong, E. W. P., Chen, Y., Rubin, M. A., Beltran, H., Elemento, O., Bergman, A. M., Zwart, W., Sboner, A., Dephoure, N., \u0026 Barbieri, C. E. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184141\u0022\u003ECHD1 Loss Alters AR Binding at Lineage-Specific Enhancers and Modulates Distinct Transcriptional Programs to Drive Prostate Tumorigenesis\u003C\/a\u003E. \u003Ci\u003ECancer Cell\u003C\/i\u003E, \u003Ci\u003E35\u003C\/i\u003E(4), 603-617e8.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Lee, R. S., Zhang, L., Berger, A., Lawrence, M. G., Song, J., Niranjan, B., Davies, R. G., Lister, N. L., Sandhu, S. K., Rubin, M. A., Risbridger, G. P., Taylor, R. A., Rickman, D. S., Horvath, L. G., \u0026 Daly, R. J. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184140\u0022\u003ECharacterization of the ERG-regulated Kinome in Prostate Cancer Identifies TNIK as a Potential Therapeutic Target\u003C\/a\u003E. \u003Ci\u003ENeoplasia\u003C\/i\u003E, \u003Ci\u003E21\u003C\/i\u003E(4), 389-400.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Rubin, M. A., \u0026 Demichelis, F. (2019). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184139\u0022\u003EThe Genomics of Prostate Cancer: A Historic Perspective.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003ECold Spring Harbor Perspectives in Medicine\u003C\/i\u003E, \u003Ci\u003E9\u003C\/i\u003E(3).","year":2019,"type":"Journal Article (Review)"},{"title":"Skvortsova, K., Masle-Farquhar, E., Luu, P.-L., Song, J. Z., Qu, W., Zotenko, E., Gould, C. M., Du, Q., Peters, T. J., Colino-Sanguino, Y., Pidsley, R., Nair, S. S., Khoury, A., Smith, G. C., Miosge, L. A., Reed, J. H., Kench, J. G., Rubin, M. A., Horvath, L., \u2026 Clark, S. J. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184137\u0022\u003EDNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns\u003C\/a\u003E. \u003Ci\u003ECancer Cell\u003C\/i\u003E, \u003Ci\u003E35\u003C\/i\u003E(2), 297-314e8.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Beltran, H., Oromendia, C., Danila, D. C., Montgomery, B., Hoimes, C., Szmulewitz, R. Z., Vaishampayan, U., Armstrong, A. J., Stein, M., Pinski, J., Mosquera, J. M., Sailer, V., Bareja, R., Romanel, A., Gumpeni, N., Sboner, A., Dardenne, E., Puca, L., Prandi, D., \u2026 Tagawa, S. T. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184123\u0022\u003EA Phase II Trial of the Aurora Kinase A Inhibitor Alisertib for Patients with Castration-resistant and Neuroendocrine Prostate Cancer: Efficacy and Biomarkers\u003C\/a\u003E. \u003Ci\u003EClinical Cancer Research\u003C\/i\u003E, \u003Ci\u003E25\u003C\/i\u003E(1), 43-51.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Fernandez, E. M., Eng, K., Beg, S., Beltran, H., Faltas, B. M., Mosquera, J. M., Nanus, D. M., Pisapia, D. J., Rao, R. A., Robinson, B. D., Rubin, M. A., Elemento, O., Sboner, A., Shah, M. A., \u0026 Song, W. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184236\u0022\u003ECancer-Specific Thresholds Adjust for Whole Exome Sequencing-based Tumor Mutational Burden Distribution\u003C\/a\u003E. \u003Ci\u003EJCO Precision Oncology\u003C\/i\u003E, \u003Ci\u003E3\u003C\/i\u003E.","year":2019,"type":"Journal Article (Original Article)"},{"title":"Karkampouna, S., Grosjean, J., Klima, I., Genitsch Gratwohl, V., Sboner, A., K. Y. Ng, C., De Filippo, M., Piscuoglio, S., Spahn, M., Rubin, M. A., Thalmann, G., \u0026 Kruithof-de Julio, M. (2019). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/184477\u0022\u003EEstablishment of an androgen-sensitive patient derived xenograft model of prostate cancer\u003C\/a\u003E. \u003Ci\u003EEuropean Urology Supplements\u003C\/i\u003E, \u003Ci\u003E18\u003C\/i\u003E(1), e1154.","year":2019,"type":"Journal Article (Further Contribution)"},{"title":"Boysen, G., Rodrigues, D. N., Rescigno, P., Seed, G., Dolling, D., Riisnaes, R., Crespo, M., Zafeiriou, Z., Sumanasuriya, S., Bianchini, D., Hunt, J., Moloney, D., Perez-Lopez, R., Tunariu, N., Miranda, S., Figueiredo, I., Ferreira, A., Christova, R., Gil, V., \u2026 de Bono, J. S. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/62758\u0022\u003ESPOP-Mutated\/CHD1-Deleted Lethal Prostate Cancer and Abiraterone Sensitivity\u003C\/a\u003E. \u003Ci\u003EClinical Cancer Research\u003C\/i\u003E, \u003Ci\u003E24\u003C\/i\u003E(22), 5585-5593.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Hopkins, B. D., Pauli, C., Du, X., Wang, D. G., Li, X., Wu, D., Amadiume, S. C., Goncalves, M. D., Hodakoski, C., Lundquist, M. R., Bareja, R., Ma, Y., Harris, E. M., Sboner, A., Beltran, H., Rubin, M. A., Mukherjee, S., \u0026 Cantley, L. C. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/63529\u0022\u003ESuppression of insulin feedback enhances the efficacy of PI3K inhibitors\u003C\/a\u003E. \u003Ci\u003ENature\u003C\/i\u003E, \u003Ci\u003E560\u003C\/i\u003E(7719), 499-503.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Cotter, K. A., \u0026 Rubin, M. A. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/63528\u0022\u003ESequence of events in prostate cancer\u003C\/a\u003E. \u003Ci\u003ENature\u003C\/i\u003E, \u003Ci\u003E560\u003C\/i\u003E(7720), 557-559.","year":2018,"type":"Journal Article (Further Contribution)"},{"title":"Triscott, J. C. C., \u0026 Rubin, M. A. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/63530\u0022\u003EProstate Power Play: Does Accelerate -Deficient Cancer Progression\u003C\/a\u003E? \u003Ci\u003ECancer Discovery\u003C\/i\u003E, \u003Ci\u003E8\u003C\/i\u003E(6), 682-685.","year":2018,"type":"Journal Article (Further Contribution)"},{"title":"Mateo, J., Cheng, H. H., Beltran, H., Dolling, D., Xu, W., Pritchard, C. C., Mossop, H., Rescigno, P., Perez-Lopez, R., Sailer, V., Kolinsky, M., Balasopoulou, A., Bertan, C., Nanus, D. M., Tagawa, S. T., Thorne, H., Montgomery, B., Carreira, S., Sandhu, S., \u2026 de Bono, J. S. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/63531\u0022\u003EClinical Outcome of Prostate Cancer Patients with Germline DNA Repair Mutations: Retrospective Analysis from an International Study\u003C\/a\u003E. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E73\u003C\/i\u003E(5), 687-693.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Sailer, V., Schiffman, M. H., Kossai, M., Cyrta, J., Beg, S., Sullivan, B., Pua, B. B., Lee, K. S., Talenfeld, A. D., Nanus, D. M., Tagawa, S. T., Robinson, B. D., Rao, R. A., Pauli, C., Bareja, R., Beltran, L. S., Sigaras, A., Eng, K. W., Elemento, O., \u2026 Mosquera, J. M. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/157996\u0022\u003EBone biopsy protocol for advanced prostate cancer in the era of precision medicine\u003C\/a\u003E. \u003Ci\u003ECancer\u003C\/i\u003E, \u003Ci\u003E124\u003C\/i\u003E(5), 1008-1015.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Gillessen, S., Attard, G., Beer, T. M., Beltran, H., Bossi, A., Bristow, R., Carver, B., Castellano, D., Chung, B. H., Clarke, N., Daugaard, G., Davis, I. D., de Bono, J., Borges Dos Reis, R., Drake, C. G., Eeles, R., Efstathiou, E., Evans, C. P., Fanti, S., \u2026 Omlin, A. G. (2018). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158366\u0022\u003EManagement of Patients with Advanced Prostate Cancer: The Report of the Advanced Prostate Cancer Consensus Conference APCCC 2017.\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EEuropean Urology\u003C\/i\u003E, \u003Ci\u003E73\u003C\/i\u003E(2), 178-211.","year":2018,"type":"Journal Article (Review)"},{"title":"McNair, C., Xu, K., Mandigo, A. C., Benelli, M., Leiby, B., Rodrigues, D., Lindberg, J., Gronberg, H., Crespo, M., De Laere, B., Dirix, L., Visakorpi, T., Li, F., Feng, F. Y., de Bono, J., Demichelis, F., Rubin, M. A., Brown, M., \u0026 Knudsen, K. E. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/157993\u0022\u003EDifferential impact of RB status on E2F1 reprogramming in human cancer\u003C\/a\u003E. \u003Ci\u003EJournal of Clinical Investigation\u003C\/i\u003E, \u003Ci\u003E128\u003C\/i\u003E(1), 341-358.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Shoag, J., Liu, D., Blattner, M., Sboner, A., Park, K., Deonarine, L., Robinson, B. D., Mosquera, J. M., Chen, Y., Rubin, M. A., \u0026 Barbieri, C. E. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/157979\u0022\u003ESPOP mutation drives prostate neoplasia without stabilizing oncogenic transcription factor ERG\u003C\/a\u003E. \u003Ci\u003EJournal of Clinical Investigation\u003C\/i\u003E, \u003Ci\u003E128\u003C\/i\u003E(1), 381-386.","year":2018,"type":"Journal Article (Original Article)"},{"title":"D\u2019Alfonso, T. M., Subramaniyam, S., Ginter, P. S., Mosquera, J. M., Croyle, J., Liu, Y.-F., Rubin, M. A., \u0026 Shin, S. J. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/157995\u0022\u003ECharacterization of CD34-deficient myofibroblastomas of the breast\u003C\/a\u003E. \u003Ci\u003EThe Breast Journal\u003C\/i\u003E, \u003Ci\u003E24\u003C\/i\u003E(1), 55-61.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Rubin, M. A., \u0026 Demichelis, F. (2018). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158060\u0022\u003EThe Genomics of Prostate Cancer: emerging understanding with technologic advances\u003C\/a\u003E. \u003Ci\u003EModern Pathology\u003C\/i\u003E, \u003Ci\u003E31\u003C\/i\u003E(S1), S1-11.","year":2018,"type":"Journal Article (Original Article)"},{"title":"Shukla, S., Cyrta, J., Murphy, D. A., Walczak, E. G., Ran, L., Agrawal, P., Xie, Y., Chen, Y., Wang, S., Zhan, Y., Li, D., Wong, E. W. P., Sboner, A., Beltran, H., Mosquera, J. M., Sher, J., Cao, Z., Wongvipat, J., Koche, R. P., \u2026 Chen, Y. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/157997\u0022\u003EAberrant Activation of a Gastrointestinal Transcriptional Circuit in Prostate Cancer Mediates Castration Resistance\u003C\/a\u003E. \u003Ci\u003ECancer Cell\u003C\/i\u003E, \u003Ci\u003E32\u003C\/i\u003E(6), 792-806e7.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Lee, D., Fontugne, J., Gumpeni, N., Park, K., MacDonald, T. Y., Robinson, B. D., Sboner, A., Rubin, M. A., Mosquera, J. M., \u0026 Barbieri, C. E. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/157999\u0022\u003EMolecular alterations in prostate cancer and association with MRI features\u003C\/a\u003E. \u003Ci\u003EProstate Cancer and Prostatic Diseases\u003C\/i\u003E, \u003Ci\u003E20\u003C\/i\u003E(4), 430-435.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Pauli, C., Moch, H., \u0026 Rubin, M. A. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158011\u0022\u003E[Establishment of a\u00a0living biobank : Improved guidance of precision cancer care with in vitro and in vivo cancer models]\u003C\/a\u003E. \u003Ci\u003EDer Pathologe\u003C\/i\u003E, \u003Ci\u003E38\u003C\/i\u003E(Suppl 2), 160-168.","year":2017,"type":"Journal Article (Further Contribution)"},{"title":"Dai, X., Gan, W., Li, X., Wang, S., Zhang, W., Huang, L., Liu, S., Zhong, Q., Guo, J., Zhang, J., Chen, T., Shimizu, K., Beca, F., Blattner, M., Vasudevan, D., Buckley, D. L., Qi, J., Buser, L., Liu, P., \u2026 Wei, W. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158013\u0022\u003EProstate cancer-associated SPOP mutations confer resistance to BET inhibitors through stabilization of BRD4\u003C\/a\u003E. \u003Ci\u003ENature Medicine\u003C\/i\u003E, \u003Ci\u003E23\u003C\/i\u003E(9), 1063-1071.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Huang, F. W., Mosquera, J. M., Garofalo, A., Oh, C., Baco, M., Amin-Mansour, A., Rabasha, B., Bahl, S., Mullane, S. A., Robinson, B. D., Aldubayan, S., Khani, F., Karir, B., Kim, E., Chimene-Weiss, J., Hofree, M., Romanel, A., Osborne, J. R., Kim, J. W., \u2026 Garraway, L. A. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158015\u0022\u003EExome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function ERF Mutations\u003C\/a\u003E. \u003Ci\u003ECancer Discovery\u003C\/i\u003E, \u003Ci\u003E7\u003C\/i\u003E(9), 973-983.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Minciacchi, V. R., Zijlstra, A., Rubin, M. A., \u0026 Di Vizio, D. (2017). [Review of \u003Ci\u003E\u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158014\u0022\u003EExtracellular vesicles for liquid biopsy in prostate cancer: where are we and where are we headed?\u003C\/a\u003E\u003C\/i\u003E]. \u003Ci\u003EProstate Cancer and Prostatic Diseases\u003C\/i\u003E, \u003Ci\u003E20\u003C\/i\u003E(3), 251-258.","year":2017,"type":"Journal Article (Review)"},{"title":"Wilkes, D. C., Sailer, V., Xue, H., Cheng, H., Collins, C. C., Gleave, M., Wang, Y., Demichelis, F., Beltran, H., Rubin, M. A., \u0026 Rickman, D. S. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158012\u0022\u003EA germline FANCA alteration that is associated with increased sensitivity to DNA damaging agents\u003C\/a\u003E. \u003Ci\u003ECold Spring Harbor Molecular Case Studies\u003C\/i\u003E, \u003Ci\u003E3\u003C\/i\u003E(5).","year":2017,"type":"Journal Article (Original Article)"},{"title":"Wang, H., Barbieri, C. E., He, J., Gao, Y., Shi, T., Wu, C., Schepmoes, A. A., Fillmore, T. L., Chae, S.-S., Huang, D., Mosquera, J. M., Qian, W.-J., Smith, R. D., Srivastava, S., Kagan, J., Camp, D. G., Rodland, K. D., Rubin, M. A., \u0026 Liu, T. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158019\u0022\u003EQuantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics\u003C\/a\u003E. \u003Ci\u003EJournal of Translational Medicine\u003C\/i\u003E, \u003Ci\u003E15\u003C\/i\u003E(1), 175.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Sanda, M. G., Feng, Z., Howard, D. H., Tomlins, S. A., Sokoll, L. J., Chan, D. W., Regan, M. M., Groskopf, J., Chipman, J., Patil, D. H., Salami, S. S., Scherr, D. S., Kagan, J., Srivastava, S., Thompson, I. M., Siddiqui, J., Fan, J., Joon, A. Y., Bantis, L. E., \u2026 Taneja, S. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158020\u0022\u003EAssociation Between Combined TMPRSS2:ERG and PCA3 RNA Urinary Testing and Detection of Aggressive Prostate Cancer\u003C\/a\u003E. \u003Ci\u003EJAMA Oncology\u003C\/i\u003E, \u003Ci\u003E3\u003C\/i\u003E(8), 1085-1093.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Dhingra, P., Martinez-Fundichely, A., Berger, A., Huang, F. W., Forbes, A. N., Liu, E. M., Liu, D., Sboner, A., Tamayo, P., Rickman, D. S., Rubin, M. A., \u0026 Khurana, E. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158022\u0022\u003EIdentification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network\u003C\/a\u003E. \u003Ci\u003EGenome Biology\u003C\/i\u003E, \u003Ci\u003E18\u003C\/i\u003E(1), 141.","year":2017,"type":"Journal Article (Original Article)"},{"title":"O\u2019Malley, P. G., Nguyen, D. T. P., Al Hussein Al Awamlh, B., Wu, G., Thompson, I. M., Sanda, M., Rubin, M. A., Wei, J. T., Lee, R., Christos, P., Barbieri, C., \u0026 Scherr, D. S. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158028\u0022\u003ERacial Variation in the Utility of Urinary Biomarkers PCA3 and T2ERG in a Large Multicenter Study\u003C\/a\u003E. \u003Ci\u003EThe Journal of Urology\u003C\/i\u003E, \u003Ci\u003E198\u003C\/i\u003E(1), 42-49.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Zou, M., Toivanen, R., Mitrofanova, A., Floch, N., Hayati, S., Sun, Y., Le Magnen, C., Chester, D., Mostaghel, E. A., Califano, A., Rubin, M. A., Shen, M. M., \u0026 Abate-Shen, C. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158025\u0022\u003ETransdifferentiation as a Mechanism of Treatment Resistance in a Mouse Model of Castration-Resistant Prostate Cancer\u003C\/a\u003E. \u003Ci\u003ECancer Discovery\u003C\/i\u003E, \u003Ci\u003E7\u003C\/i\u003E(7), 736-749.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Romanel, A., Garritano, S., Stringa, B., Blattner, M., Dalfovo, D., Chakravarty, D., Soong, D., Cotter, K. A., Petris, G., Dhingra, P., Gasperini, P., Cereseto, A., Elemento, O., Sboner, A., Khurana, E., Inga, A., Rubin, M. A., \u0026 Demichelis, F. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158033\u0022\u003EInherited determinants of early recurrent somatic mutations in prostate cancer\u003C\/a\u003E. \u003Ci\u003ENature Communications\u003C\/i\u003E, \u003Ci\u003E8\u003C\/i\u003E(1), 48.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Rickman, D. S., Beltran, H., Demichelis, F., \u0026 Rubin, M. A. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158034\u0022\u003EBiology and evolution of poorly differentiated neuroendocrine tumors\u003C\/a\u003E. \u003Ci\u003ENature Medicine\u003C\/i\u003E, \u003Ci\u003E23\u003C\/i\u003E(6), 664-673.","year":2017,"type":"Journal Article (Further Contribution)"},{"title":"Huang, L., Fernandes, H., Zia, H., Tavassoli, P., Rennert, H., Pisapia, D., Imielinski, M., Sboner, A., Rubin, M. A., Kluk, M., \u0026 Elemento, O. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158047\u0022\u003EThe cancer precision medicine knowledge base for structured clinical-grade mutations and interpretations\u003C\/a\u003E. \u003Ci\u003EJournal of the American Medical Informatics Association\u003C\/i\u003E, \u003Ci\u003E24\u003C\/i\u003E(3), 513-519.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Pauli, C., Hopkins, B. D., Prandi, D., Shaw, R., Fedrizzi, T., Sboner, A., Sailer, V., Augello, M., Puca, L., Rosati, R., McNary, T. J., Churakova, Y., Cheung, C., Triscott, J. C. C., Pisapia, D., Rao, R., Mosquera, J. M., Robinson, B., Faltas, B. M., \u2026 Rubin, M. A. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158135\u0022\u003EPersonalized In Vitro and In Vivo Cancer Models to Guide Precision Medicine\u003C\/a\u003E. \u003Ci\u003ECancer Discovery\u003C\/i\u003E, \u003Ci\u003E7\u003C\/i\u003E(5), 462-477.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Imielinski, M., \u0026 Rubin, M. A. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158038\u0022\u003EProstate cancer: Clinical hallmarks in whole cancer genomes\u003C\/a\u003E. \u003Ci\u003ENature Reviews - Clinical Oncology\u003C\/i\u003E, \u003Ci\u003E14\u003C\/i\u003E(5), 265-266.","year":2017,"type":"Journal Article (Further Contribution)"},{"title":"Sailer, V., Pauli, C., Merzier, E. C., Mosquera, J. M., Beltran, H., Rubin, M. A., \u0026 Rao, R. A. (2017). \u003Ca target=\u0022_blank\u0022 href=\u0022https:\/\/boris-portal.unibe.ch\/handle\/20.500.12422\/158049\u0022\u003EOn-site Cytology for Development of Patient-Derived Three-dimensional Organoid Cultures - A Pilot Study\u003C\/a\u003E. \u003Ci\u003EAnticancer Research\u003C\/i\u003E, \u003Ci\u003E37\u003C\/i\u003E(4), 1569-1573.","year":2017,"type":"Journal Article (Original Article)"},{"title":"Blattner, M., Liu, D., Robinson, B. D., Huang, D., Poliakov, A., Gao, D., Nataraj, S., Deonarine, L. D., Augello, M. A., Sailer, V., Ponnala, L., Ittmann, M., Chinnaiyan, A. M., Sboner, A., Chen, Y., Rubin, M. A., \u0026 Barbieri, C. E. 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